Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01045 ATGCCTCCGGGCTCGGATACTATAAATTCTGGACCCACTCCCTCCTCTCGCTGGCTTATTTTACCTACAATACTTCACTCTGCTTCACGCTCTCTGTCTCCTTCTTTGTCCGTTTCAACTGTCGGGGCGCTCTGGTTTTTTTTTTGTAGCGCAATGACGGATACTACGGATGATATAGCGGAGGAAATCTCGTTTCAGAGCTTCGATGATGACTGCAAATTGCTGGGAAGCCTCCTCAACGATGTATTGCAGAGGGAAGTCGGAAGCGAGTTCATGGAGAAGGTTGAGAGAACGCGAGTTCTTGCGCAGTCAGCATGTAATATGAGGATGGCTGGCATTGAGGATACGGCGGAGCTTTTGGAGAAGCAGCTCGCGACTGAGATATTGAACATGACTTTAGAAGAAGCCTTCACACTTGCTCGTGCATTTAGTCACTATCTCAATTTGATGGGCATCGCTGAAACTCATCACAGGGTTCGAAAGGCACGCAATGTAGCTCATCTATCGAGATCTTGTGATGATGTTTTTAACCAGCTAGTGCAGGGTGGAATCTCTCAGGAGGAGCTTTACAACACCTTCTGCAAGCAGGAGGTCGAGATTGTCCTTACTGCACATCCAACTCAAATTAATCGTCGAACGTTACAGTACAAACATGTTCGAATTGCACATTTATTGGACTATAATGACAGGCCTGATCTCAGTCATGAAGATCGAGAAATGCTGATTGAAGATCTGGTGAGAGAGATAACCTCAATATGGCAGACAGATGAGCTGAGACGTCACAAGCCTTCACCAGTTGATGAAGCTAGGGCTGGCTTGAACATTGTGGAGCAGACCCTATGGAAAGCTGTTCCTCATTATTTACGCCGTGTCAGTAATGCCTTAAAGAAGCATACGGGGAAGCCTCTTCCACTGACATGTACACCAATAAAATTTGGCTCTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTGACAGCAAAGGTCACAAGGGATGTTTCGCTTCTGTCTAGGTGGATGGCTATTGATCTATATTTTCGAGAGATTGACAGTCTCAGGTTTGAACTTTCCATGGATCGATGCAGTGACCAATTATCAGGATTGGCCCATGAAATTCTAGAAGAAGAAGCTTCTATAGAGGAACGACACGAGAGTTGGAATCAATCTTTGGGAAGAAATGAATTGAAGCCTCAAGGTCAACATCCTCCAGCCTTTCCTACACAACTTCCACCTGGAGCTGATCTTCCGTCCTGCACTGGCAAGATGTTTTCTGCCTTAGGTGGTCACCATTCTTCAAGTTCAGATTCACTAATTCATGATTCTAGCCAAAATACTCGTTTACCATTATCGAATGGAATTTCAGTTAACTCTAGTACTTCTCAGCCAACTGCAGTACCTCGGTCAGGTTCTTTCAACTCTATGCAAGCACTCACTCCGAGGAAACTAAATGCAGATTCTCAGACCGGGAGATCCAGTTTCCACAAGCTTTTAGAACCCAAGCTCCTCCATCGTCCTGGCATAGCTCCTTACAGAGTTGTTCTTAACAGTGTAAAAGAAAAGCTTATGAAAACTCGGAGACGAGTGGAACTTCTCATTGAGGATCTTCCTTGTGAATATGACCCTTCGGAGTATTATGAATCAGCTGATCAAATTTTGGAGCCCCTCCTACTTTGCTATGAGTCTCTGCAATCTTGTGGATCTGGCGTGCTTGCTGATGGGCGGCTGGCTGATCTAATACGAAGAGTTTCTACCTTTGGGATGGTACTTATGAAGCTCGATCTTCGTCAAGAATCTGGCAGACATGCGGAAACACTAGATGCAATAACGAGATACTTGGACATGGGCACGTACAGTGAATGGGACGAAGAAAAGAAGCTTGAATTTCTAGCAAAAGAGCTGAAAGGGAAGAGGCCACTAGTTCCATCAACTATAGAGGTTACTTCTGAAGTTAAAGAGGTTTTGGACACATTCCGTGTTGCTGCTGAACTTGGCACTGATTCACTGGGGGCTTATGTGATCTCTATGGCGTCCAATGCCAGTGATGTACTTGCTGTGGAACTTTTGCAAAAGGATGCCCGACTTGCTGTTAGTGGAGAGCTAGGAAAACCATGCCCTGGTGGAACGCTGCGGGTGGTTCCATTGTTTGAAACTGTGAAAGACTTGCGAGGAGCAGGATCAGTGATTAGGAAACTACTGTCAATTGATTGGTACCGCGACCACATTCTAAGGCATCACAACGGACACCAAGAGGTGATGGTTGGCTATTCTGATTCTGGTAAAGATGCTGGGCGTTTCACTGCTGCGTGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCTTGTAATGAGTATGGTATTAAGGTTACTCTGTTTCATGGTCGTGGAGGGAGTATTGGGCGTGGTGGCGGCCCCACTTATCTTGCCATCCAATCTCAACCACCTGGTTCTGTAATGGGTACACTTCGATCAACGGAGCAAGGTGAGATGGTGCAGGCCAAGTTCGGGCTACCACAGACAGCTGTTAGACAACTTGAGATATACACAACAGCCGTGCTTCTTGCAACTATACGGCCCCCACAACCACCTCGAGAAGAAAAGTGGCGTAATCTCATGGAAGAGATCTCAAAAATCAGTTGCCAGAATTACCGCAGTGTAGTGTACGAGAATCCAGAATTTCTAGCTTACTTCCACGAGGCCACTCCTCAGGCGGAGCTCGGCTTCCTCAACATAGGTAGCCGCCCGACGAGAAGAAAGGCGTCGATCGGAATCGGCCATCTCCGTGCCATTCCGTGGGTATTCGCTTGGACCCAAACCAGGTTTGTTCTTCCCGCTTGGCTCGGAATTGGAGCCGGTCTGAAGGGAGTATGCGAAAAGGGACATACTGATGACTTAAAAGCAATGTACAAAGAATGGCCTTTCTTTCAATGTACCATCGATCTTATCGAGATGGTTTTAGGAAAAGCCGACATTCCTATAGCCAAGCACTACGATGAAATTCTAGTGTCGGAAAGCAGGCAGAAGCTTGGTGCTGAACTGAGAAGGGAACTTTTAGCGACAGAACGATATGTTTTGGTTGTGAGCGAGCACGAGAAACTGTCGGAAAACAACCGGAGCTTGAGGAGACTGATTGAGAGTAGGCTGCCTTACCTTAATCCGATGAACATGTTGCAGGTTGAAATATTAAAGAGGCTTAGACGTGATGAGGATAATCATAAGCTGAGAGATGCATTGCTTATCACCATCAATGGAATAGCTGCTGGGATGAGGAACACCGGTTGA 3285 46.27 MPPGSDTINSGPTPSSRWLILPTILHSASRSLSPSLSVSTVGALWFFFCSAMTDTTDDIAEEISFQSFDDDCKLLGSLLNDVLQREVGSEFMEKVERTRVLAQSACNMRMAGIEDTAELLEKQLATEILNMTLEEAFTLARAFSHYLNLMGIAETHHRVRKARNVAHLSRSCDDVFNQLVQGGISQEELYNTFCKQEVEIVLTAHPTQINRRTLQYKHVRIAHLLDYNDRPDLSHEDREMLIEDLVREITSIWQTDELRRHKPSPVDEARAGLNIVEQTLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYFREIDSLRFELSMDRCSDQLSGLAHEILEEEASIEERHESWNQSLGRNELKPQGQHPPAFPTQLPPGADLPSCTGKMFSALGGHHSSSSDSLIHDSSQNTRLPLSNGISVNSSTSQPTAVPRSGSFNSMQALTPRKLNADSQTGRSSFHKLLEPKLLHRPGIAPYRVVLNSVKEKLMKTRRRVELLIEDLPCEYDPSEYYESADQILEPLLLCYESLQSCGSGVLADGRLADLIRRVSTFGMVLMKLDLRQESGRHAETLDAITRYLDMGTYSEWDEEKKLEFLAKELKGKRPLVPSTIEVTSEVKEVLDTFRVAAELGTDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGKPCPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRDHILRHHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATIRPPQPPREEKWRNLMEEISKISCQNYRSVVYENPEFLAYFHEATPQAELGFLNIGSRPTRRKASIGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCEKGHTDDLKAMYKEWPFFQCTIDLIEMVLGKADIPIAKHYDEILVSESRQKLGAELRRELLATERYVLVVSEHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRRDEDNHKLRDALLITINGIAAGMRNTG 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 38902445 38911345 - BLOR21832 Blo16g01045 72236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01045 1094 MobiDBLite consensus disorder prediction 427 472 - -
Blo16g01045 1094 PRINTS Phosphoenolpyruvate carboxylase signature 253 269 IPR021135 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 PRINTS Phosphoenolpyruvate carboxylase signature 312 327 IPR021135 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 PRINTS Phosphoenolpyruvate carboxylase signature 200 213 IPR021135 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 70 1094 IPR015813 GO:0003824
Blo16g01045 1094 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 59 1094 - -
Blo16g01045 1094 Pfam Phosphoenolpyruvate carboxylase 498 1094 IPR021135 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 Pfam Phosphoenolpyruvate carboxylase 70 388 IPR021135 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 752 764 IPR033129 -
Blo16g01045 1094 MobiDBLite consensus disorder prediction 380 472 - -
Blo16g01045 1094 Coils Coil 515 535 - -
Blo16g01045 1094 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 201 212 IPR018129 -
Blo16g01045 1094 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 59 1094 IPR021135 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 Hamap Phosphoenolpyruvate carboxylase [ppc]. 60 1094 IPR022805 GO:0006099|GO:0008964|GO:0015977
Blo16g01045 1094 Gene3D Phosphoenolpyruvate/pyruvate domain 340 399 - -
Blo16g01045 1094 Gene3D Phosphoenolpyruvate/pyruvate domain 469 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01045 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - qsu:112006698 1766.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00288 Blo-Chr16:6917296 Blo16g01045 Blo-Chr16:38902445 1.42E-08 dispersed
Blo16g01045 Blo-Chr16:38902445 Blo19g00008 Blo-Chr19:139053 5.46E-50 dispersed
Blo16g01045 Blo-Chr16:38902445 Blo10g00735 Blo-Chr10:23039856 5.11E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01045 Blo_Chr16 FPKM 8.410959 7.94521 7.114031 7.343553 12.26502 11.262981 11.663563 15.90467 16.265368 15.70827