Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01053 ATGCAAACGCCTTCATTTCCCAGCATATGTTCCAGTGGAAGTGGCTGTCTTGAACCAGATGAAGAAGATGAAGAATCCATTTTCCTTTCTCTTTGTCCTCCAGGCCAGCCCATCTCTAAGGACTATTTTCTTAACCACTCTTATTCTTCTTCTTCGTCTTCCTCACACCAACCACTAATTTATCACCAAAACCCTAATGTAGACAACGGTGTTACAGTAGCCTTGCACATTGGTCCACCTCCCTGTACAAACCCTAACGAACCCTTTGCTCGTCCTCTCGACGGCCATTACTGGATTCCTTCACCAGCTCAAATCCTCGTCGGCCCTACTCAGTTTTCTTGTACTGTCTGCAATAAAACTTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCGCAATACAGGAAAGGCCCGGAATCATTAAAAGGAACAAAGGCAGCTTCTTCTTTGCTTAGATTGCCTTGCTATTGCTGCGCAGAAGGGTGCAAGAACAACATAGAACATCCAAGATCGAAGCCATTAAAGGATTTCAGAACTCTGCAGACCCATTACAAGAGAAAGCATGGGGCGAAGCCATTTGGGTGCAGAAAATGTGGAAAGCCTTTTGCAGTGAGAGGAGATTGGAGGACTCACGAGAAAAACTGTGGAAAGCTCTGGTTTTGCATTTGTGGGTCTGATTTCAAGCACAAAAGGTCTCTGAAAGATCACGTTCGAGCCTTTGGAAATGGCCATGCATCTCATTCTATTGAACTTTGCCAGGCTGATGAGGAAGAAAATTTGGATTATCAGGAGGAAGAGCATGAAAATAGAGATCGCTTCCTCGGGAAGGACATGGCCGTCGTTACCGGAGGAGTACGTGTAGGTGTGATCAACCTTCAGCCTCATCCATCAAAACTCCTTTCCCCATTTCTGGTTATGGAGTGTGGTGATATTATCTACAGAAGCACTCGTCCGAAGTCGAGCGGCTTGACAGGCACAATTCCTGGCACTATTCTAGCTCTCGGTACTCTTTCTTATCTCTGGGCAACGCATGTTGTGTCTCCCGGCTTTTTCGATTTGTTTGTTCTTGCATTTCTGGAGAGACTTTTCAGACCCACTTTCAAAACAGTTGTTTGGCTGAATTTTCAGGATGTTTTTGTTTTTGGGAAAAGGTTGGGAGAGGGAGCTTTTGGTGTGGGTTTATTGAGTTTCATTGGCGATTCGCTTGATTGA 1224 44.93 MQTPSFPSICSSGSGCLEPDEEDEESIFLSLCPPGQPISKDYFLNHSYSSSSSSSHQPLIYHQNPNVDNGVTVALHIGPPPCTNPNEPFARPLDGHYWIPSPAQILVGPTQFSCTVCNKTFNRYNNMQMHMWGHGSQYRKGPESLKGTKAASSLLRLPCYCCAEGCKNNIEHPRSKPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHASHSIELCQADEEENLDYQEEEHENRDRFLGKDMAVVTGGVRVGVINLQPHPSKLLSPFLVMECGDIIYRSTRPKSSGLTGTIPGTILALGTLSYLWATHVVSPGFFDLFVLAFLERLFRPTFKTVVWLNFQDVFVFGKRLGEGAFGVGLLSFIGDSLD 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39048920 39055546 - BLOR21840 Blo16g01053 72244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01053 407 PANTHER ZINC FINGER PROTEIN WIP6 16 274 - -
Blo16g01053 407 SMART c2h2final6 160 192 IPR013087 -
Blo16g01053 407 SMART c2h2final6 197 217 IPR013087 -
Blo16g01053 407 SMART c2h2final6 112 134 IPR013087 -
Blo16g01053 407 PANTHER ZINC FINGER PROTEIN WIP2 16 274 IPR043584 GO:0003700|GO:0010468
Blo16g01053 407 SUPERFAMILY beta-beta-alpha zinc fingers 178 217 IPR036236 -
Blo16g01053 407 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Blo16g01053 407 Gene3D Classic Zinc Finger 111 134 - -
Blo16g01053 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Blo16g01053 407 SUPERFAMILY beta-beta-alpha zinc fingers 99 134 IPR036236 -
Blo16g01053 407 Gene3D Classic Zinc Finger 153 244 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00485 Blo16g01053 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00133 Blo-Chr11:1026571 Blo16g01053 Blo-Chr16:39048920 1.65E-98 dispersed
Blo12g00588 Blo-Chr12:24185750 Blo16g01053 Blo-Chr16:39048920 2.02E-97 dispersed
Blo16g01053 Blo-Chr16:39048920 Blo07g01404 Blo-Chr7:34080193 2.56E-22 dispersed
Blo01g00485 Blo-Chr1:5329380 Blo16g01053 Blo-Chr16:39048920 5.08E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13458 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01053 - - zju:107429479 439.499