Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01054 ATGGGGATGGATTATTCGGAGAAAATGCAGGAAATGGCTATGGAGATGGGTTTCAAAAAGTATGTGGAGGCGTTAAAGGAAGAACGCCGGAAAATTACTGTTTTCCAGCGCGAGCTGCCGCTCTGTTTAGAACTTATCACTCAAGCGATTGAGTCTTGTACGCAGCAATTATCGGGGACGACGACGGAGTGTTTTAATGGAGGACAATCTGATTGCTCCGAGCAAACTTCCAGTGAATGTCCGGTGCTGGAGGAATTTATTCCGGTCAAAAAGGATTTATCTTCAGAATTTTTAGATGAAGAGAGAGAATCTCTAAAAATGAAAAAGGACAACAAAATTAGCGAGAAGGAGCAAGTGGCTCAATCGGATTGGCTTAAATCTGCTCAGCTATGGAATCCAGATCCTGACCTTGAGGAGGATTTACCGAAGAAGACGACTATCGTGGAGGTGAAGAAAAATGGCGGAGCTTTCCAGCCATTTCACAGAGAAAAAACAACCGGTAAAACAAACCCACCCGTCGAAAATGGGCTGACGGCGACTGTAATTTGTACGGCGGAAACAACTTCCCAAAGCAGCACGAGGCGAGAACAGAAAGAAGAACAGGGTAAAAGAAAGCTCCGTCGGTGTTGGTCGCCGGAGTTACATCGCCGATTCTTGAGTGCTCTTCAACAGCTCGGCGGCTCACATGTGGCGACGCCAAAGCAGATTAGGGAGCTAATGAAAGTGGATGCTCTGACTAACGATGAAGTTAAAAGCCATTTACAGAAATATCGTTTGCACACTAGAAGGTCAAGTCCTGTACACAACAATGGCGTCAAACAGCCACCGCAATATGTGGTAGTGGGTGGAATATGGGTGCCGCCGCCGGAATACGCAGTGGCGCGGGAGACAACCGTTCCCGGAGATGGAAACGAATTCTATGTAGTTCCAGCCACAGTTTCACAAGGTGCCCCGGGGTCCACCATTAAAAGGCCACAGCCAAAGCGATTGGTTCAGTCTAGCACGGAAGGAAGAAGGCTCAGCCATGGCGGAGAAGACGGGTGGGAAGTCGGTCTTCATTCTAATTCTCCGACGTCGTCTTCCACTCACACTTCTACAGCTTCCCCTGGGCTTTGA 1116 48.3 MGMDYSEKMQEMAMEMGFKKYVEALKEERRKITVFQRELPLCLELITQAIESCTQQLSGTTTECFNGGQSDCSEQTSSECPVLEEFIPVKKDLSSEFLDEERESLKMKKDNKISEKEQVAQSDWLKSAQLWNPDPDLEEDLPKKTTIVEVKKNGGAFQPFHREKTTGKTNPPVENGLTATVICTAETTSQSSTRREQKEEQGKRKLRRCWSPELHRRFLSALQQLGGSHVATPKQIRELMKVDALTNDEVKSHLQKYRLHTRRSSPVHNNGVKQPPQYVVVGGIWVPPPEYAVARETTVPGDGNEFYVVPATVSQGAPGSTIKRPQPKRLVQSSTEGRRLSHGGEDGWEVGLHSNSPTSSSTHTSTASPGL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39063120 39064593 + BLOR21841 Blo16g01054 72245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01054 371 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Blo16g01054 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Blo16g01054 371 MobiDBLite consensus disorder prediction 352 371 - -
Blo16g01054 371 PANTHER TRANSCRIPTION FACTOR HHO2 18 366 - -
Blo16g01054 371 Gene3D - 204 262 - -
Blo16g01054 371 MobiDBLite consensus disorder prediction 315 338 - -
Blo16g01054 371 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Blo16g01054 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Blo16g01054 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 366 IPR044787 GO:0003700|GO:0006355
Blo16g01054 371 MobiDBLite consensus disorder prediction 315 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01054 - - - vvi:100257723 373.244
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo11g00832 Blo16g01054 CCT
Blo01g00489 Blo16g01054 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00798 Blo-Chr16:33448564 Blo16g01054 Blo-Chr16:39063120 3.90E-63 dispersed
Blo16g01054 Blo-Chr16:39063120 Blo05g00652 Blo-Chr5:21105555 4.45E-34 dispersed
Blo01g00489 Blo-Chr1:5393225 Blo16g01054 Blo-Chr16:39063120 0 wgd
Blo11g00832 Blo-Chr11:14222147 Blo16g01054 Blo-Chr16:39063120 2.28E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13459 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01054 Blo_Chr16 FPKM 21.208334 18.389658 14.615059 12.463367 18.670309 20.435297 16.585569 13.144131 11.27894 11.124001