Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01056 ATGGCTTTTCTGGGTCAGGAGAAGAAAAAGCTCGTAGGCGATGGAAGCAGAAATTCCAAGGGGTTGCCTCTCCAAAGCCTTGCCTCTGTTGAATCTTTATCTATTATGGCAATGCGTCACCCAAGAAGATTTGTTCTGTCTGGCTGCCTGTCTGCTCTGATTGTGATGACCATTCTTTCCGCACTGATGGGTTGGGCTGCTCCAAATTTGATCTCACGTAAATGGACTCATCACATAACTACCCTTTTGTTCTTTGGATTTGGTCTATGGTCTTTGTGGGATGCATTTACTAATGATGGGGAATCTGAAGAATTTGCTGAAGTTGAAGCAAAGCTGGAGGCTGATTTGAAGGTGAACAAGAAAACTGCGAAAGACAGTAGTAAGGATGGCGATGAGTTGAAAAAGCGGAATCGGCCTGTTCTTTGGTCATTATTCTCCCCCATCTTCCTGAAGGCATTTTCCATCACATTTTTTGGTGAATGGGGTGACAAGAGTCAGCTGGCTACCATAGGCTTAGCAGCAGATGAGAATCCAGTAGGTGTAGTACTTGGTGGAATCATAGGACAAGCAATGTGTACTGTTGCCGCTGTACTTGGGGGAAGGAGCTTGGCATCTCAGATATCTGAGAAAATAGTCGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAATCCTACCTTTCGGTCATCGAGTAA 702 44.44 MAFLGQEKKKLVGDGSRNSKGLPLQSLASVESLSIMAMRHPRRFVLSGCLSALIVMTILSALMGWAAPNLISRKWTHHITTLLFFGFGLWSLWDAFTNDGESEEFAEVEAKLEADLKVNKKTAKDSSKDGDELKKRNRPVLWSLFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPVGVVLGGIIGQAMCTVAAVLGGRSLASQISEKIVALSGGILFIVFGIQSYLSVIE 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39096836 39106108 - BLOR21843 Blo16g01056 72247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01056 233 Pfam Uncharacterized protein family UPF0016 151 224 IPR001727 -
Blo16g01056 233 Pfam Uncharacterized protein family UPF0016 35 88 IPR001727 -
Blo16g01056 233 PANTHER GDT1 FAMILY PROTEIN 34 231 - -
Blo16g01056 233 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 34 231 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01056 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - twl:120012805 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00252 Blo-Chr10:3583946 Blo16g01056 Blo-Chr16:39096836 2.05E-43 dispersed
Blo11g00411 Blo-Chr11:3565392 Blo16g01056 Blo-Chr16:39096836 2.20E-46 dispersed
Blo01g00495 Blo-Chr1:5424527 Blo16g01056 Blo-Chr16:39096836 3.09E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g276 . Blo16g01056 . Bda11g01139 Bpe13g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0461 Cone9ag0473 . . . . . . . Bda11g01139 . . . Bma06g00766 . . . . . . Car15g00851 Cpe13g00410 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01056 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.128032 0.0 0.0