Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01062 ATGAATAGGAAAATCCGGGTTATATGCAATGATCCTGATGCTACTGATTCGTCTTCGAGTGAAGATGAAGTTGACCGACCGAAGAAATTCAAGCGAATTGTGCGTGAAATCCTTCTGCCTCTTGTTCCTTCGATTTCAGCAAAGGCTGTCCATGCTGAGAATTCTTGTGAAGGTAGTAGTAACTATGGGAGCAAAGCCCCAGAGGCCGAGCAAAGTCGACATCCAATTCGGAGGTGTATTTCAACGAAAAGTTTAAGCACAAGGTCCTCTTCTTCGAAATACAGGGGTGTTAGACTGAGGAAATGGGGGAAATGGGCTGCTGAAATTCGAGACCCGTTTAAAGGAGCTCGAATATGGTTAGGTACTTACAACACAGCCGAGGAAGCTTCATGGGCATACGAGAGGAAGAAGCTTGAGTTTGAAGCTATGGCAATGGAGGCCCCTGAAAAGAGCAACAGCCCATCTACCTCTCATACCCTCTCTCAATCTCAGCGACATTCGAATCCTGTTCCGGCTGAAGAATCTGAAAGTGTTCTATCGCAAACTTCCCCATCATCCGCACTCGAAGCATCAACTTCCGTTCCCTATCCAGGCAGCAAAGAAACTATCCAAGAAGAATGTATTGATACAAATTTAGACAAACTAGAAATACCCGATTTGAGTTTCATCGACTATGGCCTAGCCTCGGCTCCCTTTTGCGAAGACATCAGCTTAGGGCCTGAATTTGATGGGTTTCTGGTAGATGACATCGGAGAAATTCTTGGCGAGTTCGAGACGCATGGATTTCCAGAAGCACCAAGTGGGGGCCTTCCTGATTGCAATTTCAACGAAGATATTTCGTTTTGGGTGGATCAACATTCCCTGCTCCTAAGTTTTGCAGCAAGATAG 888 45.72 MNRKIRVICNDPDATDSSSSEDEVDRPKKFKRIVREILLPLVPSISAKAVHAENSCEGSSNYGSKAPEAEQSRHPIRRCISTKSLSTRSSSSKYRGVRLRKWGKWAAEIRDPFKGARIWLGTYNTAEEASWAYERKKLEFEAMAMEAPEKSNSPSTSHTLSQSQRHSNPVPAEESESVLSQTSPSSALEASTSVPYPGSKETIQEECIDTNLDKLEIPDLSFIDYGLASAPFCEDISLGPEFDGFLVDDIGEILGEFETHGFPEAPSGGLPDCNFNEDISFWVDQHSLLLSFAAR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39170269 39171156 + BLOR21849 Blo16g01062 72253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01062 295 Gene3D AP2/ERF domain 92 147 IPR036955 GO:0003700|GO:0006355
Blo16g01062 295 CDD AP2 94 140 IPR001471 GO:0003700|GO:0006355
Blo16g01062 295 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Blo16g01062 295 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Blo16g01062 295 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 3 257 - -
Blo16g01062 295 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Blo16g01062 295 ProSiteProfiles AP2/ERF domain profile. 93 154 IPR001471 GO:0003700|GO:0006355
Blo16g01062 295 MobiDBLite consensus disorder prediction 146 199 - -
Blo16g01062 295 MobiDBLite consensus disorder prediction 55 74 - -
Blo16g01062 295 MobiDBLite consensus disorder prediction 1 26 - -
Blo16g01062 295 MobiDBLite consensus disorder prediction 149 199 - -
Blo16g01062 295 SMART rav1_2 93 147 IPR001471 GO:0003700|GO:0006355
Blo16g01062 295 SUPERFAMILY DNA-binding domain 92 140 IPR016177 GO:0003677
Blo16g01062 295 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01062 - - - zju:107409444 250.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00820 Blo-Chr4:8619794 Blo16g01062 Blo-Chr16:39170269 2.03E-33 dispersed
Blo16g01062 Blo-Chr16:39170269 Blo03g00329 Blo-Chr3:6888860 5.22E-23 dispersed
Blo16g01062 Blo-Chr16:39170269 Blo15g00074 Blo-Chr15:625916 2.20E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g303 . Blo16g01062 Bda01g02077 Bda11g01147 Bpe13g01346 Bpe10g00938 . Bma15g00086 Cmo04g01583 Cmo18g01035 . Cma18g01025 Car04g01564 Car18g00945 Sed11g1612 . . Bhi07g01328 Tan04g0862 Cmetu03g2262 Lac13g0490 Hepe01g1195 . . Cla05g02303 Cam05g2476 Cec05g2499 Cco05g2541 Clacu05g2471 Cmu05g2333 Cre05g2450 . . Cone13ag0288 . Lsi04g00259 Csa05g02608 Chy10g01143 Cme10g00264 . . . Bda11g01147 . Bpe02g02269 Bma01g00167 Bma06g00759 . . Cmo15g00939 . . . Car15g00843 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13460 PF00847 AP2 3.70E-10 CL0081 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01062 Blo_Chr16 FPKM 94.629356 106.93885 77.346855 80.571373 21.747011 20.758902 22.430815 24.326027 22.195557 23.704567