Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01073 ATGGGTTCTGCAACTTCTTCAATGGCTGCAAAGTTTGCGTTTTTTCCTCCAGACCCACCAACCTACGCCATTAACGCAGAAGAAACCTCCGGGAAGCTGATGATTTCAAACGTGAATCAGAGAGAAGACGTCGACGTATTACGACTGAGCACCAAGAGAGGGAATGAGATTGTAGCCATGTTCGTGAGGAATCCGTCAGCTTCATTGACTGTGCTTTATTCCCATGGAAATGCAGCTGATCTTGGTCAAATTTATCACCTTTTCACTGAACTTAGTCTCCATCTCAATGTCAATCTGATGGGGTATGATTATTCTGGGTATGGACAGTCTTCTGGAAAGCCAAGTGAGCAGGACACATATGCAGACATAGAAGCTGCATTTAGATGCCTAGAAGAGAAATATGGTGTGAAGGAAGAAGACACTGTATTGTATGGACAATCGGTCGGAAGTGGACCGACATTGGAAATGGCGACTCGATTGCCTCGTTTGAGAGCTGTTGTTCTTCACAGTCCAATTTTGTCTGGGCTCCGTGTCATGTCCTCTGTGAAGAGAACATTCTGGTTTGACATTTACAAGAATATCGATAAAATTCCACTGCTTGATTGCCCCGTTCTCGTTATTCATGGAACTGAAGATGATGTTGTGGATTTCTCGCACGGGAAGCAATTGTGGGAGCGTTGTAAAGAGAAGTACGAGCCTCTATGGCTAAAAGGAGGAAGCCATTGCAATTTGGAGCTTTTCCCAGAGTATTTAAGGCATCTCAAGAAGTTCATTTTGGCAATGGAGAAGCTACCGAGCCATGAAGAAACAGCCAATCCAACCAAAAAGTCAGGACCTGAAGAAGAACAATCTCGGCCTAGCACAGAGGGTAGAGAGAAATCAAGAAGTAGCACCGACAGGAGGGACAAATCGAGGAGGAGCATCGATCGTTCGGGAAAGGCAAGGAACAGCACGGATCAATCCGAGAGAGCGAGGAAGAGCTTCGACAGGCAAGATCGAATACAAGCAATGGAATTTCATCTTGTTTTTCCAAGAAAGTTTCCCCTGAGGCTTGATTTGTGCTGTGAAATTTTCAGACGCTTGGCTGCCAATGCTTTTCTCGCTTCGTTTCCATCTTGGTCGCCTTTCACTCTCGGAACTTCTAAGCAGGGATTAAGTCTGAGGAGAGTGCTTTTCTTGCCCATCAAACCCATACATTTGAACCATTCAGACCGTCATAGGGCGGGGCTTTCCCGTCTTACCATCGGCACCATGCTCGGGAATAAAGAATCGATACGAAATCTGGTTTCATCGTCGATGGCTGCCATTTCAGAGTTCTTAGCATTGATAGTATGTGCAGAAAAAGAGAAAGATCTGTTCATGGAGATTGGATGCTTCTTTCATAGAACTTCCCCAGCTATCATGGAGTTTCAGAAAACTGAGAACCCACCAGAAATTGCAGAGCAGATTCTCAAATCATTATTGAAAAGTATAAATTCGGCGAAAGAGATAATGGAGAAGTTTCAGCAAGATATGATCAATCCAGTTTCAAATCCTCAACCAATGAGAAGTATATCAGAACTTGAGGAGGTGATTAAACAAATGGGTGAACAACTGAACTCAGCTCCATCTTCGACGTTTGGAGACGGAGAATACGCAAAAGTAGCCATCCGATCTCTCGCAAATGAGATGCAGTTTATCAACTTTGAAATCGAAGAAAGGCGAGCTTCTCCAACCAAAATAACGGATAAAGAGATTCCCCCGGAGGACCAATCAGGAGAAGTAGAATTCGATCTCTACCCTGTACAAATTGAACATTCTACAGATAATCAAGTACCATTTGATCCGGTAAAGTCGAACAGCAGTCGAAAGACGAACAGATTGCCACAATCGCAGCCGCAAAAGGGTCGATTTATGGAGCCTCTGTACGAGACCTTCTTCTGTCCATTGACAGAGGAAATCATGGATGATCCAGTTACAATACAATCTGGAGTCACCTATGAAAAACAGGCAATTCTGGAGTGGTTTGAACAGTTTGAAGATTCAGAAGACATTTTCTGCCCAATCACAAAGCAGAAACTGGGGTCTAAATCATTCACTCCCAACAAGGCTATCAAATCTACGATAATCCAATGGACGGAAAGAAACGAAGTGGCGATGATCAAAGTTGCTCGAGCCGCATTGTCCGTAGCCAGTTCAGAAAATATGGTGATTCAAGCATTCAAAGATCTCTTGAATATCTGCAAGAGAAACCAACAAAACAAGGCTCAGATTTGCAAGATTGGAATACTGCCCTTGCTCAATAAATTCATGGAATTCAAAGACATGGAGATCAAATGTTTGGTTCTGCAATTGTTATATCGTTTGGCAGACAACGATGAACACAACACGGAAATCATAGAAAAAACAGTTGAAATTTCCCCGATAATCAATATGCTATCAAGCGGTCACCAAAACATCACAAATGCAGCATTGCGGTTATTACTTGAACTTTCAAAAGCCGGGTCGATATGTGAAAAAATTGGATTGATAACCGGAGGAATCCTGAGCCTTCTCACAATAAAGTATAGTCAGTTAACAGATTCCTCTATTTCTGGAAAAGTAGATCAAATTTTGAAGAATCTCGAGAGCTATTCGCCGAACATCAGGTGTATGGCAGAATATGGCCACTTGGAACCTCTCTTGACCCACCTTGCTGAAGGTTCTGAGGAGACTAAAATAGAAATGGCAAGCTACCTTGGGTATATTGTTCTTGGACACGACAATCAAAACGACGTGGCAAAGAGAGCGGCTCCAACTTTAGTCAGCATGGTCCAAAGTGGAAATGCAGTAAGCAGAAAGGCAGCATTCAAGGCATTGATCCAGATTTCATCTTACCAATCTAATGGAAAAATACTAGCTGAATCTGGAACAATACAAGCCATGGCTGAAGAGCTATTCAATCAGACAATCTCTGATGAGCCAATGAACTCAAAAGTGGAAGCAGCTGTGATTCTTGCAAATATACTCGAATCGGTAATTGAGCTTGAGAATTGGCAAGTTGATACTCATGGCAACACTTTAAACTCAGATTATATGGCTTATAACATAATATCCTTGCTGAGGAACTCGGCTCCGGATGAACTCAAACTTAGCCTCATGAGAATTCTTTTGTGTCTGAAAAAGTTGCCAAAATTAATGGACGCCATTGTTTTTCGAGTAAAGGACAGTGAAGCTGGCTATACTATGATTGAACTCATCAACAACTTACATGAAGAACTTGGAATTGGAGCAATGAAGCTGCTCATTTCTCTCTGCCCTTTCATAGGCCATAGCTTAGCTGAAAGACTCTGCAAGATGGGGGACCAGCTGGAGAATCTAATACAAAACCTCACCAGAGAATCGCAGATAAGCGAAAAGCAGGCACTCTCGGCAAAATTTCTTGCAACACTTCCCCACGAGAACTTGACTCTCAACCTTGCCCTTGCGGGGAAGAATGTAGTCCCTACAATCCTGCAAACAATCAATCAAATCCAAAGAAGTGAAACAAGAACAAGTAGGTATTCCTGTGCTTACTTAGAGGGATTAGTTGGGATTATAGTCAGATTTACTACTACTTTATATGAACCCCAGATTTTGTTTCTTGCAAGAACCCACAATTTCACATTGTTTTTCACCGAATTGCTCATGAAAACATCGAGCAACGAAGTTCAGAAGTTATCTGCAATTGGATTAGGGAATCTCTCATCAGCCACAATTAGTCTACTAAAAGTGCCAGAAACGGCAACAATCAAGGGAAACAAGCTGTCTTTCTTACACAAAGCACTGTCTTTTGGGTCATCAAAAAGAAACAAAACGAAGGGCAAAATACCGTTCTGTCCAGTTCATAGAGGCACTTGCTCGTCGCAGAATACGTTCTGCTTAATCAACGCAAATGCAGTGGAGAGATTGTTGGATTCTCTAGACAATGAGAACGAAGAAGTTATCGAAGCTTCTCTGTCAGCACTTTGTACCTTGTTGGACGAAAAACTGGATGTCGATGAGAGTGTGAATATGTTATGCAGTTATAATGCTATGAGACATGTTCTAAATGTGGTAAAAGAACACAAGCAAGAAGCTTTATGGCAGAAATCTCTCTGGGTAATAGAGAGATTTCTGTTGAAAGGTGGAGATAAGTCTGCTTCAGACATTTCACAGGACAGATTGTTTCCGACTGCATTGATTAGTGCTTTTCATCATGGAGATGATCATACAAGGGAAATGGCTGAGAGGATAATGAGACTTATGAACATGATGCCTAAGTTCTCTGTCACAGACTACTCTTTCTGA 4287 42.2 MGSATSSMAAKFAFFPPDPPTYAINAEETSGKLMISNVNQREDVDVLRLSTKRGNEIVAMFVRNPSASLTVLYSHGNAADLGQIYHLFTELSLHLNVNLMGYDYSGYGQSSGKPSEQDTYADIEAAFRCLEEKYGVKEEDTVLYGQSVGSGPTLEMATRLPRLRAVVLHSPILSGLRVMSSVKRTFWFDIYKNIDKIPLLDCPVLVIHGTEDDVVDFSHGKQLWERCKEKYEPLWLKGGSHCNLELFPEYLRHLKKFILAMEKLPSHEETANPTKKSGPEEEQSRPSTEGREKSRSSTDRRDKSRRSIDRSGKARNSTDQSERARKSFDRQDRIQAMEFHLVFPRKFPLRLDLCCEIFRRLAANAFLASFPSWSPFTLGTSKQGLSLRRVLFLPIKPIHLNHSDRHRAGLSRLTIGTMLGNKESIRNLVSSSMAAISEFLALIVCAEKEKDLFMEIGCFFHRTSPAIMEFQKTENPPEIAEQILKSLLKSINSAKEIMEKFQQDMINPVSNPQPMRSISELEEVIKQMGEQLNSAPSSTFGDGEYAKVAIRSLANEMQFINFEIEERRASPTKITDKEIPPEDQSGEVEFDLYPVQIEHSTDNQVPFDPVKSNSSRKTNRLPQSQPQKGRFMEPLYETFFCPLTEEIMDDPVTIQSGVTYEKQAILEWFEQFEDSEDIFCPITKQKLGSKSFTPNKAIKSTIIQWTERNEVAMIKVARAALSVASSENMVIQAFKDLLNICKRNQQNKAQICKIGILPLLNKFMEFKDMEIKCLVLQLLYRLADNDEHNTEIIEKTVEISPIINMLSSGHQNITNAALRLLLELSKAGSICEKIGLITGGILSLLTIKYSQLTDSSISGKVDQILKNLESYSPNIRCMAEYGHLEPLLTHLAEGSEETKIEMASYLGYIVLGHDNQNDVAKRAAPTLVSMVQSGNAVSRKAAFKALIQISSYQSNGKILAESGTIQAMAEELFNQTISDEPMNSKVEAAVILANILESVIELENWQVDTHGNTLNSDYMAYNIISLLRNSAPDELKLSLMRILLCLKKLPKLMDAIVFRVKDSEAGYTMIELINNLHEELGIGAMKLLISLCPFIGHSLAERLCKMGDQLENLIQNLTRESQISEKQALSAKFLATLPHENLTLNLALAGKNVVPTILQTINQIQRSETRTSRYSCAYLEGLVGIIVRFTTTLYEPQILFLARTHNFTLFFTELLMKTSSNEVQKLSAIGLGNLSSATISLLKVPETATIKGNKLSFLHKALSFGSSKRNKTKGKIPFCPVHRGTCSSQNTFCLINANAVERLLDSLDNENEEVIEASLSALCTLLDEKLDVDESVNMLCSYNAMRHVLNVVKEHKQEALWQKSLWVIERFLLKGGDKSASDISQDRLFPTALISAFHHGDDHTREMAERIMRLMNMMPKFSVTDYSF 1428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39280455 39291319 - BLOR21860 Blo16g01073 72264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01073 1428 Gene3D - 1194 1416 IPR011989 -
Blo16g01073 1428 SMART arm_5 1195 1236 IPR000225 GO:0005515
Blo16g01073 1428 SMART arm_5 785 826 IPR000225 GO:0005515
Blo16g01073 1428 SMART arm_5 744 784 IPR000225 GO:0005515
Blo16g01073 1428 SMART arm_5 871 911 IPR000225 GO:0005515
Blo16g01073 1428 SMART arm_5 1287 1327 IPR000225 GO:0005515
Blo16g01073 1428 Pfam U-box domain 637 710 IPR003613 GO:0004842|GO:0016567
Blo16g01073 1428 Coils Coil 484 504 - -
Blo16g01073 1428 MobiDBLite consensus disorder prediction 601 628 - -
Blo16g01073 1428 Pfam Serine aminopeptidase, S33 69 175 IPR022742 -
Blo16g01073 1428 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 426 1426 - -
Blo16g01073 1428 Coils Coil 1297 1317 - -
Blo16g01073 1428 SUPERFAMILY alpha/beta-Hydrolases 45 258 IPR029058 -
Blo16g01073 1428 Coils Coil 1100 1127 - -
Blo16g01073 1428 SUPERFAMILY ARM repeat 1109 1416 IPR016024 -
Blo16g01073 1428 SUPERFAMILY RING/U-box 624 715 - -
Blo16g01073 1428 Pfam Armadillo/beta-catenin-like repeat 1287 1325 IPR000225 GO:0005515
Blo16g01073 1428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 707 IPR013083 -
Blo16g01073 1428 ProSiteProfiles U-box domain profile. 634 712 IPR003613 GO:0004842|GO:0016567
Blo16g01073 1428 MobiDBLite consensus disorder prediction 601 626 - -
Blo16g01073 1428 SUPERFAMILY ARM repeat 721 997 IPR016024 -
Blo16g01073 1428 SMART Ubox_2 638 705 IPR003613 GO:0004842|GO:0016567
Blo16g01073 1428 MobiDBLite consensus disorder prediction 267 329 - -
Blo16g01073 1428 Gene3D - 708 1046 IPR011989 -
Blo16g01073 1428 Gene3D alpha/beta hydrolase 44 258 IPR029058 -
Blo16g01073 1428 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 426 1426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01073 - - - qsu:112034274 1105.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01639 Blo-Chr1:56211543 Blo16g01073 Blo-Chr16:39280455 3.11E-137 dispersed
Blo03g00103 Blo-Chr3:3269593 Blo16g01073 Blo-Chr16:39280455 6.34E-117 dispersed
Blo08g00531 Blo-Chr8:15256883 Blo16g01073 Blo-Chr16:39280455 8.35E-121 dispersed
Blo14g00588 Blo-Chr14:9751789 Blo16g01073 Blo-Chr16:39280455 2.98E-110 dispersed
Blo15g00353 Blo-Chr15:4473969 Blo16g01073 Blo-Chr16:39280455 1.36E-21 dispersed
Blo16g01073 Blo-Chr16:39280455 Blo18g00419 Blo-Chr18:4553183 2.91E-148 dispersed
Blo16g01073 Blo-Chr16:39280455 Blo18g00742 Blo-Chr18:19986181 7.48E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01073 Blo_Chr16 FPKM 9.562189 11.416412 14.747506 12.798869 11.726914 13.985427 11.488996 8.563534 7.211844 7.834319