Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01078 ATTATGAACTCAGAGGAGAAGGCTACAATGGAGGTCGTTCCACCTTCTGAACATCTCTGCTATGTCCGATGCAACTTCTGCAACACTATTCTTGCGGTTGGGATTCCATGCAAACGTTTGCTGGATACAGTGACAGTGAAGTGCGGCCATTGCAGCAACCTTTCTTTTCTGAGCACTAGACCTCCATTACAAGGCCAATGCCTTGATCATCCATTGTCTCTTCAGACGCAGGTATTTTGCAAAGGCCAGCCTTCATCATCGACCTCTTCCTCGTCCAGTGAGCCATTATCACCCAAAGCTCCATTTGTGGTCAAACAAATTGGGTTTCTCCTAAAATCTCCATTTTTTTTTATTTCAGCTCCTGAGAAGAAGCACAGAATTCCATCTGCATACAATCGTTTCATGAAAGAGGAAATACAGCGTCTAAAGGCAGCCAACCCTGAAATACCTCATCGAGAAGCATTCAGCAAAGCAGCAAAAAGTTGGGCGAGGTACATTCCAAATGCACCAGGAGGATCAAGCTCTGCTGGAATGAGCAACAATGTAAGTTAA 552 44.75 IMNSEEKATMEVVPPSEHLCYVRCNFCNTILAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLDHPLSLQTQVFCKGQPSSSTSSSSSEPLSPKAPFVVKQIGFLLKSPFFFISAPEKKHRIPSAYNRFMKEEIQRLKAANPEIPHREAFSKAAKSWARYIPNAPGGSSSAGMSNNVS 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39331050 39332573 + BLOR21865 Blo16g01078 72269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01078 183 Pfam YABBY protein 15 165 IPR006780 GO:0007275
Blo16g01078 183 SUPERFAMILY HMG-box 118 163 IPR036910 -
Blo16g01078 183 PANTHER PROTEIN YABBY 6-RELATED 8 176 IPR006780 GO:0007275
Blo16g01078 183 Gene3D High mobility group box domain 119 167 IPR036910 -
Blo16g01078 183 PANTHER PROTEIN CRABS CLAW 8 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01078 K25796 YAB; plant-specific transcription factor YABBY family protein - vvi:100261225 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00898 Blo-Chr16:36804288 Blo16g01078 Blo-Chr16:39331050 1.71E-31 dispersed
Blo16g01078 Blo-Chr16:39331050 Blo03g00407 Blo-Chr3:11414194 1.29E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g01078 . 2 177 C2C2-YABBY Transcription Factor Family AT1G69180 53.6 1.1e-44 176.8
Blo01g00279 . 59 213 C2C2-YABBY Transcription Factor Family AT2G45190 63.5 4.5e-50 194.5
Blo12g00165 . 59 190 C2C2-YABBY Transcription Factor Family AT2G45190 65.7 4.5e-42 167.9
Blo02g01054 CCT 64 219 C2C2-YABBY Transcription Factor Family AT2G45190 54.2 6.5e-41 164.1
Blo03g00407 CCT 66 220 C2C2-YABBY Transcription Factor Family AT2G45190 56.0 1.9e-40 162.5
Blo02g01054 CCT 21 193 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 7.0e-44 174.1
Blo14g00771 . 11 169 C2C2-YABBY Transcription Factor Family AT1G08465 57.9 2.2e-42 169.1
Blo03g00407 CCT 23 197 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 2.9e-42 168.7
Blo01g00625 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 3.8e-42 168.3
Blo12g00165 . 17 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.0 8.0e-40 160.6
Blo01g00279 . 17 190 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 1.8e-39 159.5
Blo01g00279 . 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 8.2e-49 190.7
Blo03g00407 CCT 33 219 C2C2-YABBY Transcription Factor Family AT4G00180 53.4 9.0e-48 187.2
Blo12g00165 . 27 190 C2C2-YABBY Transcription Factor Family AT4G00180 56.7 7.2e-45 177.6
Blo02g01054 CCT 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 9.4e-45 177.2
Blo11g00921 . 3 156 C2C2-YABBY Transcription Factor Family AT1G23420 66.5 2.2e-43 172.9
Blo01g00625 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 75.0 1.7e-65 245.7
Blo14g00771 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 70.1 1.1e-59 226.5
Blo16g00898 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 65.9 5.6e-53 204.1
Blo02g01054 CCT 21 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 4.8e-44 174.5
Blo03g00407 CCT 23 185 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.4e-43 172.2
Blo01g00279 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 7.6e-42 167.2
Blo12g00165 . 17 181 C2C2-YABBY Transcription Factor Family AT2G26580 53.3 1.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13464 PF04690 YABBY 1.80E-51 CL0114 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01078 Blo_Chr16 FPKM 33.545094 37.641613 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0