Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01078 ATTATGAACTCAGAGGAGAAGGCTACAATGGAGGTCGTTCCACCTTCTGAACATCTCTGCTATGTCCGATGCAACTTCTGCAACACTATTCTTGCGGTTGGGATTCCATGCAAACGTTTGCTGGATACAGTGACAGTGAAGTGCGGCCATTGCAGCAACCTTTCTTTTCTGAGCACTAGACCTCCATTACAAGGCCAATGCCTTGATCATCCATTGTCTCTTCAGACGCAGGTATTTTGCAAAGGCCAGCCTTCATCATCGACCTCTTCCTCGTCCAGTGAGCCATTATCACCCAAAGCTCCATTTGTGGTCAAACAAATTGGGTTTCTCCTAAAATCTCCATTTTTTTTTATTTCAGCTCCTGAGAAGAAGCACAGAATTCCATCTGCATACAATCGTTTCATGAAAGAGGAAATACAGCGTCTAAAGGCAGCCAACCCTGAAATACCTCATCGAGAAGCATTCAGCAAAGCAGCAAAAAGTTGGGCGAGGTACATTCCAAATGCACCAGGAGGATCAAGCTCTGCTGGAATGAGCAACAATGTAAGTTAA 552 44.75 IMNSEEKATMEVVPPSEHLCYVRCNFCNTILAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLDHPLSLQTQVFCKGQPSSSTSSSSSEPLSPKAPFVVKQIGFLLKSPFFFISAPEKKHRIPSAYNRFMKEEIQRLKAANPEIPHREAFSKAAKSWARYIPNAPGGSSSAGMSNNVS 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39331050 39332573 + BLOR21865 Blo16g01078 72269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01078 183 Pfam YABBY protein 15 165 IPR006780 GO:0007275
Blo16g01078 183 SUPERFAMILY HMG-box 118 163 IPR036910 -
Blo16g01078 183 PANTHER PROTEIN YABBY 6-RELATED 8 176 IPR006780 GO:0007275
Blo16g01078 183 Gene3D High mobility group box domain 119 167 IPR036910 -
Blo16g01078 183 PANTHER PROTEIN CRABS CLAW 8 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00898 Blo-Chr16:36804288 Blo16g01078 Blo-Chr16:39331050 1.71E-31 dispersed
Blo16g01078 Blo-Chr16:39331050 Blo03g00407 Blo-Chr3:11414194 1.29E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13464 PF04690 YABBY 1.80E-51 CL0114 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01078 K25796 - vvi:100261225 270.781