Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01084 ATGTCAAGGCTCTGGATTTCTCCAATACGAAAAAAAATCGAAGAGCCTCTCATGAAATTGGTCTTCGCAGTCATCTCCGAAAATCACCCATCAAATAAAATAGAAGAAAGAAACTCTAATGATAGTAACCTACTTGTTAACGCCCCTAGAACTTCTAAATTTAAAGGGATGGCGTCTGAAATGGTTTATCCATTTCCCCTTCCAGAGAATGTGGGCAGTAAGTTTGTGGAGCAGTATTATAACATTCTTCATTACTTTCCCGAGGAGGCTTACAAATTCTATCGGGATTCTAGTGTTCTTACCCGACCTGGTCCAGATGAAAAGATGACGACGGTGATGGCAATGCAAGGAATTAATGACAAGATACTCTCCCTGGACTACAAGAACCGTGACTTTGAAATATCGACGATAGATACTCAGCGTTCATTTAATGGCGGGGTGCTTATCATGGTGACTGGTTATTTTACTGGGAAAGACAACCTTAAAAGAAGGTTTTCCCAGGTGTTTTTTCTAGCCCCACAAGAAACCGGTTTGTTCGTCTTAAACGACATCTTCAACTACTTCGATCAATGTGCTGACGGCTGTGTTGATGCTGGCAATGTTGTTGAAAGTGCTCCGGAATCTCCGAAGACCCCAGATCCTGTTGAAACCAATGATGGGTTCAAATCTGATCATTCTCCGGAAAATGAAAACCCTCCATTGGTAGAAGATGCTGACGGCGGCCGAGCCACTGGTCATGTATTGGAAAATAGAAAAGAATCATCTGATGAAATTGGTCTTATTAGAGCAGATCCGGTCGTGGTGAAGACTGAGGAGATTCCTGCTGCCACAGAGACAGCTGCTCCGACCATTTTGGAGGATGCTTCGAAAAAATCTTTTGCAAGTGTGGTCAATGCTCTGAGTGATAATGCTGCTCTATTTCAGAGAGTTTCACCTTCTAAGCCTGCAGGAAAGCCACAGATTTCTTCAGCACCTAAAGTTTCGTCTCAGAAAATCGAGACTGTTGTCGAGAAGACCAATATGCCTGCAGTCAAGGCTCATGCTATCTTTGTTCCAAACTTGCCCATGAGTGCTACTGTTGGAGAACTTGAAAAGCTATTTATGAAGTTTGGTTCCATCAAACCTAATGGCATTCAAGTTAGGAGTAAGCAGGGATCCTGCTTTGGGTTTGTGGAGTTTGAATCAGCAACATCAATGCAAAATGCGCTTAAGGCTTCCCCTATCTTGTTTGGCGACCGAAAACTTTTCATCCAAGAAAGACGAGGAAATGGCACCTACAGAAACAATAACTATAGGCCTCAGGGGAATTTTGGCGAGGGGGAGGGCAATGGACTTCGTCGGGGTCGAGAGTTTGTCGGTCGACCACGTGGAAATATTGCACAAAACAAAGAAGCTAATACTAGGAGGTTTCAATGA 1416 43.43 MSRLWISPIRKKIEEPLMKLVFAVISENHPSNKIEERNSNDSNLLVNAPRTSKFKGMASEMVYPFPLPENVGSKFVEQYYNILHYFPEEAYKFYRDSSVLTRPGPDEKMTTVMAMQGINDKILSLDYKNRDFEISTIDTQRSFNGGVLIMVTGYFTGKDNLKRRFSQVFFLAPQETGLFVLNDIFNYFDQCADGCVDAGNVVESAPESPKTPDPVETNDGFKSDHSPENENPPLVEDADGGRATGHVLENRKESSDEIGLIRADPVVVKTEEIPAATETAAPTILEDASKKSFASVVNALSDNAALFQRVSPSKPAGKPQISSAPKVSSQKIETVVEKTNMPAVKAHAIFVPNLPMSATVGELEKLFMKFGSIKPNGIQVRSKQGSCFGFVEFESATSMQNALKASPILFGDRKLFIQERRGNGTYRNNNYRPQGNFGEGEGNGLRRGREFVGRPRGNIAQNKEANTRRFQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39374989 39378411 + BLOR21871 Blo16g01084 72275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01084 471 MobiDBLite consensus disorder prediction 202 241 - -
Blo16g01084 471 Gene3D - 59 192 - -
Blo16g01084 471 MobiDBLite consensus disorder prediction 421 471 - -
Blo16g01084 471 SUPERFAMILY NTF2-like 69 187 IPR032710 -
Blo16g01084 471 Pfam Nuclear transport factor 2 (NTF2) domain 71 187 IPR002075 -
Blo16g01084 471 ProSiteProfiles Nuclear transport factor 2 domain profile. 71 187 IPR018222 -
Blo16g01084 471 SUPERFAMILY RNA-binding domain, RBD 345 448 IPR035979 GO:0003676
Blo16g01084 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 422 IPR000504 GO:0003723
Blo16g01084 471 MobiDBLite consensus disorder prediction 422 436 - -
Blo16g01084 471 SMART rrm1_1 348 418 IPR000504 GO:0003723
Blo16g01084 471 Gene3D - 321 461 IPR012677 -
Blo16g01084 471 MobiDBLite consensus disorder prediction 217 232 - -
Blo16g01084 471 PANTHER BNAA02G14660D PROTEIN 63 468 - -
Blo16g01084 471 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 63 468 IPR039539 -
Blo16g01084 471 CDD NTF2 68 187 IPR018222 -
Blo16g01084 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 405 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01084 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - zju:107429041 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00164 Blo-Chr1:2201593 Blo16g01084 Blo-Chr16:39374989 1.75E-09 dispersed
Blo04g00794 Blo-Chr4:7963754 Blo16g01084 Blo-Chr16:39374989 2.25E-67 dispersed
Blo15g00340 Blo-Chr15:4095849 Blo16g01084 Blo-Chr16:39374989 1.61E-56 dispersed
Blo16g01084 Blo-Chr16:39374989 Blo06g01213 Blo-Chr6:35731719 1.11E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g31 . Blo16g01084 Bda01g02126 . Bpe13g01372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0524 . . . . . . . . . . . . Bma06g00740 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018106 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01084 Blo_Chr16 FPKM 8.481764 9.099272 45.526505 47.796661 33.183792 38.04084 32.338051 15.639621 16.400961 15.730249