Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01084 ATGTCAAGGCTCTGGATTTCTCCAATACGAAAAAAAATCGAAGAGCCTCTCATGAAATTGGTCTTCGCAGTCATCTCCGAAAATCACCCATCAAATAAAATAGAAGAAAGAAACTCTAATGATAGTAACCTACTTGTTAACGCCCCTAGAACTTCTAAATTTAAAGGGATGGCGTCTGAAATGGTTTATCCATTTCCCCTTCCAGAGAATGTGGGCAGTAAGTTTGTGGAGCAGTATTATAACATTCTTCATTACTTTCCCGAGGAGGCTTACAAATTCTATCGGGATTCTAGTGTTCTTACCCGACCTGGTCCAGATGAAAAGATGACGACGGTGATGGCAATGCAAGGAATTAATGACAAGATACTCTCCCTGGACTACAAGAACCGTGACTTTGAAATATCGACGATAGATACTCAGCGTTCATTTAATGGCGGGGTGCTTATCATGGTGACTGGTTATTTTACTGGGAAAGACAACCTTAAAAGAAGGTTTTCCCAGGTGTTTTTTCTAGCCCCACAAGAAACCGGTTTGTTCGTCTTAAACGACATCTTCAACTACTTCGATCAATGTGCTGACGGCTGTGTTGATGCTGGCAATGTTGTTGAAAGTGCTCCGGAATCTCCGAAGACCCCAGATCCTGTTGAAACCAATGATGGGTTCAAATCTGATCATTCTCCGGAAAATGAAAACCCTCCATTGGTAGAAGATGCTGACGGCGGCCGAGCCACTGGTCATGTATTGGAAAATAGAAAAGAATCATCTGATGAAATTGGTCTTATTAGAGCAGATCCGGTCGTGGTGAAGACTGAGGAGATTCCTGCTGCCACAGAGACAGCTGCTCCGACCATTTTGGAGGATGCTTCGAAAAAATCTTTTGCAAGTGTGGTCAATGCTCTGAGTGATAATGCTGCTCTATTTCAGAGAGTTTCACCTTCTAAGCCTGCAGGAAAGCCACAGATTTCTTCAGCACCTAAAGTTTCGTCTCAGAAAATCGAGACTGTTGTCGAGAAGACCAATATGCCTGCAGTCAAGGCTCATGCTATCTTTGTTCCAAACTTGCCCATGAGTGCTACTGTTGGAGAACTTGAAAAGCTATTTATGAAGTTTGGTTCCATCAAACCTAATGGCATTCAAGTTAGGAGTAAGCAGGGATCCTGCTTTGGGTTTGTGGAGTTTGAATCAGCAACATCAATGCAAAATGCGCTTAAGGCTTCCCCTATCTTGTTTGGCGACCGAAAACTTTTCATCCAAGAAAGACGAGGAAATGGCACCTACAGAAACAATAACTATAGGCCTCAGGGGAATTTTGGCGAGGGGGAGGGCAATGGACTTCGTCGGGGTCGAGAGTTTGTCGGTCGACCACGTGGAAATATTGCACAAAACAAAGAAGCTAATACTAGGAGGTTTCAATGA 1416 43.43 MSRLWISPIRKKIEEPLMKLVFAVISENHPSNKIEERNSNDSNLLVNAPRTSKFKGMASEMVYPFPLPENVGSKFVEQYYNILHYFPEEAYKFYRDSSVLTRPGPDEKMTTVMAMQGINDKILSLDYKNRDFEISTIDTQRSFNGGVLIMVTGYFTGKDNLKRRFSQVFFLAPQETGLFVLNDIFNYFDQCADGCVDAGNVVESAPESPKTPDPVETNDGFKSDHSPENENPPLVEDADGGRATGHVLENRKESSDEIGLIRADPVVVKTEEIPAATETAAPTILEDASKKSFASVVNALSDNAALFQRVSPSKPAGKPQISSAPKVSSQKIETVVEKTNMPAVKAHAIFVPNLPMSATVGELEKLFMKFGSIKPNGIQVRSKQGSCFGFVEFESATSMQNALKASPILFGDRKLFIQERRGNGTYRNNNYRPQGNFGEGEGNGLRRGREFVGRPRGNIAQNKEANTRRFQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39374989 39378411 + BLOR21871 Blo16g01084 72275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01084 471 MobiDBLite consensus disorder prediction 202 241 - -
Blo16g01084 471 Gene3D - 59 192 - -
Blo16g01084 471 MobiDBLite consensus disorder prediction 421 471 - -
Blo16g01084 471 SUPERFAMILY NTF2-like 69 187 IPR032710 -
Blo16g01084 471 Pfam Nuclear transport factor 2 (NTF2) domain 71 187 IPR002075 -
Blo16g01084 471 ProSiteProfiles Nuclear transport factor 2 domain profile. 71 187 IPR018222 -
Blo16g01084 471 SUPERFAMILY RNA-binding domain, RBD 345 448 IPR035979 GO:0003676
Blo16g01084 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 422 IPR000504 GO:0003723
Blo16g01084 471 MobiDBLite consensus disorder prediction 422 436 - -
Blo16g01084 471 SMART rrm1_1 348 418 IPR000504 GO:0003723
Blo16g01084 471 Gene3D - 321 461 IPR012677 -
Blo16g01084 471 MobiDBLite consensus disorder prediction 217 232 - -
Blo16g01084 471 PANTHER BNAA02G14660D PROTEIN 63 468 - -
Blo16g01084 471 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 63 468 IPR039539 -
Blo16g01084 471 CDD NTF2 68 187 IPR018222 -
Blo16g01084 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 405 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00164 Blo-Chr1:2201593 Blo16g01084 Blo-Chr16:39374989 1.75E-09 dispersed
Blo04g00794 Blo-Chr4:7963754 Blo16g01084 Blo-Chr16:39374989 2.25E-67 dispersed
Blo15g00340 Blo-Chr15:4095849 Blo16g01084 Blo-Chr16:39374989 1.61E-56 dispersed
Blo16g01084 Blo-Chr16:39374989 Blo06g01213 Blo-Chr6:35731719 1.11E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01084 K24983 - zju:107429041 320.857