Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01085 ATGGAACCATCCCAAGTTGTGGTTCTACCTTTGGAGCTTCCCGAACATAATTGTATGAATAACATGGGAAAGTTGAATGTGAAAGGATATAAAAATCATCGGCCTGGTATACCAGCTCTTAAGAAGCGAGGTCATGGCGGCCGTTCTTGGATAAAAATTGATCAGGATGGAAACTCAAAAATATTGGAACTTGATAAGGCCACAATAATGAGGCATTGCTCCCTACCTTCAAGAGATCTGCGACTTTTGGATCCTATGTTCATTTATCCTTCTACGATACTGGGACGAGAGAAGGCAATTGTGGTCAGTCTTGAACAGATCAGGTGTATAATCACTTCAAATGAAGTTGTTTTAATGAACTCCTTGGATGGATGTGTTGTACAGTACAGGTTGGAGCTGTCCAAGCGCCTCCAGACTTCCAAATATCAATCAGGTGAACAACTATATGGTTTACCGTTTGAGTTTAAAGCCCTGGAGCTGGCTTTGGAGCTCACTTGCATGTCTCTTGATGCTCAGGTTAAGGAACTGGAAATGGAGATATATCCCGGCCTAGATGAACTTGCATTATCCATTAACACGCTTAACCTAGAACGGGTCCGAAGATTTAAAGGCCATCTCCTTGGATTGACCCAGCGTGTTCAAAAGGTTCGTGATGAAATTGAACATCTCATGAATGATGATGGTGACATGGCTGAGATGTATTTGACTGAGAAAAAAGAAAGGTTGGAGGGTTATACCCTAAATGACCTTTACGTTCAAACAAAGCGCAGATCAAAGTTGCTATCCAAATCCGCTCCCGTCTCTCCAGTTGGATCAATTAATCGAACCCAGAAACTGGAAAGGACTTTTAGTGGTGTTGTTAGTTCAAGCAGACACGGAAGCTCGACAAGTTTATCCAACAATGGAGAAAACATTGATCAACTGGAAATGCTACTTGAAGCCTACTTTGTCGGCATAGACAACACCCTCAACAAGTTATTATCGCTCAAACAATGTATTGATGATACTGAAGATTTAATCAACATTAAACTGGATAATGTTCAGAACCACCTGATAAAATTTCAGCTACTTCTCACAGCAGCTACTTTCATGGCTACAATCTTTGCTACGGTTACAGCCGTATTCGGTATGAATTTCGCCGCTCAAATCTTTGATTCTCCAACTGCATTCAACTGGGTTTTAGCTGTAACTAGTGGCTTTTGTGTATTATTTTTCTTATCTTTCCAGATTTATTTTAGACATAAGAAATCTTTCCCACTGTAA 1263 40.54 MEPSQVVVLPLELPEHNCMNNMGKLNVKGYKNHRPGIPALKKRGHGGRSWIKIDQDGNSKILELDKATIMRHCSLPSRDLRLLDPMFIYPSTILGREKAIVVSLEQIRCIITSNEVVLMNSLDGCVVQYRLELSKRLQTSKYQSGEQLYGLPFEFKALELALELTCMSLDAQVKELEMEIYPGLDELALSINTLNLERVRRFKGHLLGLTQRVQKVRDEIEHLMNDDGDMAEMYLTEKKERLEGYTLNDLYVQTKRRSKLLSKSAPVSPVGSINRTQKLERTFSGVVSSSRHGSSTSLSNNGENIDQLEMLLEAYFVGIDNTLNKLLSLKQCIDDTEDLINIKLDNVQNHLIKFQLLLTAATFMATIFATVTAVFGMNFAAQIFDSPTAFNWVLAVTSGFCVLFFLSFQIYFRHKKSFPL 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39382813 39385742 + BLOR21872 Blo16g01085 72276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01085 420 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 356 408 IPR045863 -
Blo16g01085 420 Coils Coil 206 226 - -
Blo16g01085 420 Gene3D - 39 121 - -
Blo16g01085 420 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 7 420 IPR039204 -
Blo16g01085 420 CDD Mrs2_Mfm1p-like 50 416 IPR039204 -
Blo16g01085 420 PANTHER MAGNESIUM TRANSPORTER MRS2-5 7 420 - -
Blo16g01085 420 Gene3D Magnesium transport protein CorA, transmembrane region 126 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01085 K16075 MRS2, MFM1; magnesium transporter - rcu:8264709 551.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00506 Blo-Chr10:11257200 Blo16g01085 Blo-Chr16:39382813 4.71E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g36 . Blo16g01085 . Bda11g01176 Bpe13g01373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0537 . . . . . . . Bda11g01176 . . . Bma06g00739 . . . . . . . . Cpe07g00089 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00506 . 1 443 MRS2 Gene Family AT1G16010 82.7 5.3e-199 690.6
Blo16g01085 . 40 420 MRS2 Gene Family AT1G16010 55.9 2.6e-113 406.0
Blo01g00099 . 1 368 MRS2 Gene Family AT5G64560 81.3 5.2e-163 570.9
Blo03g00064 . 40 535 MRS2 Gene Family AT3G19640 62.8 2.9e-150 528.9
Blo03g00296 . 63 465 MRS2 Gene Family AT3G58970 67.2 5.2e-138 488.0
Blo16g01085 . 13 420 MRS2 Gene Family AT2G03620 64.2 7.0e-132 467.6
Blo10g00506 . 13 443 MRS2 Gene Family AT2G03620 52.3 9.8e-110 394.0
Blo01g00099 . 1 330 MRS2 Gene Family AT5G09690 76.2 6.9e-132 467.2
Blo01g00099 . 12 290 MRS2 Gene Family AT5G09720 66.0 9.3e-91 330.5
Blo10g00506 . 1 443 MRS2 Gene Family AT1G80900 83.3 3.1e-199 691.4
Blo16g01085 . 25 420 MRS2 Gene Family AT1G80900 53.3 4.5e-113 405.2
Blo03g01303 . 1 415 MRS2 Gene Family AT5G22830 66.0 1.4e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01085 Blo_Chr16 FPKM 35.816547 38.312981 43.456177 47.184376 52.459755 52.080086 51.303478 41.197983 38.749786 39.139229