Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01086 ATGGGATCGACAAATGTGCTCACAGATTTGGTATGGGAAGAATGGAATGGTTCTTCTTCTACGAAGCTTTCTAAAACTGCCACCATAACTACCACTCCTCACCTTACCATCGAAAGGCGAGTTATTACGATTTCATGCGGTAGCCGGTTTAATCACGTTTGGGGACGATTCTTGGATGCATTCGTTCCAGAGGGATTTCCTAGCAGTGTAACTCCGGATTATGTCCCTTTTCAAGTATGGGATTTGTTGCAGGGTCTCTCAACATACATAAGGACTATGCTTTCTACACAAGCTTTGTTGAGTGCCATTGGAGTTGGCGAGAAATCGGCAACTGTGATTGGTGCCACATTTCAGTGGTTTCTTAGGGATCTGACTGGAATGGTTGGAGGTATCTTATTCACATTCTATCAGGGATCAAATCTAGATAGTGATGCAAAAATGTGGCGTTTGGTTGCAGATCTTATGAATGATCTAGGGATGTTAATGGACCTACTCTCCCCATTATTTCCTTCAGCATTTGTACTCATTGTTTGCTTAGGCAGCCTGTCAAGATCATTCACTGGTGTTGCTAGTGGAGCTACCAGAGCTGCTTTAACACAGCATTTTGCCCTTCAGCATAACGCAGCAGATATATCTGCCAAGGAAGGAAGTCAAGAGACAGTAGCCACAATGATAGGAATGGCATTGGGTATGCTTCTTGCGCGTAATACAGTAGGACATCCGCTGGCTATTTGGTTCTCTTTTTTGTGTCTCACCATGTTTCATATGTATGCGAACTACAAGGCTGTGCAGTGCCTTGCGTTGACTTCATTAAACCCAGAGAGAAGTTCAATTGCTTTGCAGCATTTCATGGCGTCTGGTAAAGTTCTCTCACCTGAAAAAGTCTCGAGGATGGAGCATGTATTACCCACTTGGGCGGCCTTTTCATGGAGCTCCAAGAATGCAAAATTACTGCATGCTCGAGTTCAATTAGGCGTGAGGCTTACTTCCCTTGATCAATTGGAAATGATGGACTTGATGCAGTCAACGGGAGCTCACTATAATACAGCAAAGCATTTGCTGGTGGAGAGGAAGGAACATGTCGGCATTATTATGCATAAAGATTCAACCGCAGCAGATGTCTTGCGTGCTTTTATTCATGCACTTGTTATGGCAAATCTTCCTGATACAAAAAACTCCAAGCATTTGGAGAGCAGAACATGGATGGATAAAAACTATCAAGTTTTTATTGAAAAGCTGAAGTCATCGGGTTGGAAAACAGAACGACTGCTCTCGCAATCGATTGTGTGGAGAGCAAACTGGTTATCTGGTTCTGTAGATGAGAAGATTGACTAA 1335 43.3 MGSTNVLTDLVWEEWNGSSSTKLSKTATITTTPHLTIERRVITISCGSRFNHVWGRFLDAFVPEGFPSSVTPDYVPFQVWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMVGGILFTFYQGSNLDSDAKMWRLVADLMNDLGMLMDLLSPLFPSAFVLIVCLGSLSRSFTGVASGATRAALTQHFALQHNAADISAKEGSQETVATMIGMALGMLLARNTVGHPLAIWFSFLCLTMFHMYANYKAVQCLALTSLNPERSSIALQHFMASGKVLSPEKVSRMEHVLPTWAAFSWSSKNAKLLHARVQLGVRLTSLDQLEMMDLMQSTGAHYNTAKHLLVERKEHVGIIMHKDSTAADVLRAFIHALVMANLPDTKNSKHLESRTWMDKNYQVFIEKLKSSGWKTERLLSQSIVWRANWLSGSVDEKID 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39390826 39394961 + BLOR21873 Blo16g01086 72277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01086 444 PANTHER PROTEIN ROOT UVB SENSITIVE 3 8 444 - -
Blo16g01086 444 Pfam Vitamin B6 photo-protection and homoeostasis 51 286 IPR006968 -
Blo16g01086 444 PANTHER RUS1 FAMILY PROTEIN C16ORF58 8 444 IPR006968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01086 - - - jre:109014367 648.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00826 Blo-Chr7:26343107 Blo16g01086 Blo-Chr16:39390826 2.44E-50 dispersed
Blo11g00310 Blo-Chr11:2495225 Blo16g01086 Blo-Chr16:39390826 1.13E-28 dispersed
Blo16g01086 Blo-Chr16:39390826 Blo03g00281 Blo-Chr3:5692638 7.98E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g40 . Blo16g01086 . Bda11g01177 Bpe13g01375 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0907 . . . . . . . . . . Bda11g01177 . . . Bma06g00738 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008878 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01086 Blo_Chr16 FPKM 6.711278 7.062732 17.626133 18.821712 11.00485 8.012247 8.828769 13.169129 14.455067 13.79363