Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01091 ATGGCGGAAGACGAAGAGGGAGAAGAGGAAGAACCGATGGAAGAATCAGACTCTTCCAACCTGACAGATCGCTTGGACACCAGGCCGTCGGAACTCGACAGATGGGAACAAACAGAGGTGAGCCTTCGTCGAGAAGGGTTTCGCAGAGTAGGATCTGAAGTTGACAGATCTGTTTCAAAAGATAGCATTACCATAATTGATTCATTGAACAATATAAAGGGTTACAGGGCAAGAGGAGAAGCTAATTATGATGATAAAATATTTGAAGATTTGGTCCGAAGATTTGAAAAACCAGATAGTAGAAATCGATGGGATTCGCCTTTGTTTGAGTTATGGCCAAATAAAGATGGAATTGAGAAAACCTCTACTGCTATTGTAGATGCTGTATCATACTTGACTAAAAAGGTGGACTCGAAGTCGCGAGATGTTAAAATTTTACAGCCAACAATTGCCACACAAAGTACAAGGTTTTCAGAGGCTAATTCTCTTTATGAGTTGGACAGGGGTGCACAGGAAGTGATTTCTGCCATTGTTGAAGCGCAGTCTCAGGCCCTCGGTGGGCCTCTGAATGGTGTTTTACTCGGCCAAGGGCTGCCTATTGTGAACATTTCTAGATCAGTTGGTCTGCCAGAACTTCGTCGGCTGAGACGAACATTTATTAAATTAACTGGGCAAACAAGCTTAAGCGGACCACCACCACCTTCTGATGCTGATAGTGCAAAAAGAATGTTCATTGATTACTTGAACAGGGAACTTTGCTCATCCTGA 768 43.23 MAEDEEGEEEEPMEESDSSNLTDRLDTRPSELDRWEQTEVSLRREGFRRVGSEVDRSVSKDSITIIDSLNNIKGYRARGEANYDDKIFEDLVRRFEKPDSRNRWDSPLFELWPNKDGIEKTSTAIVDAVSYLTKKVDSKSRDVKILQPTIATQSTRFSEANSLYELDRGAQEVISAIVEAQSQALGGPLNGVLLGQGLPIVNISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFIDYLNRELCSS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39422069 39426403 - BLOR21878 Blo16g01091 72282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01091 255 Gene3D - 15 144 IPR027417 -
Blo16g01091 255 Pfam Chromatin associated protein KTI12 81 249 IPR013641 -
Blo16g01091 255 Pfam Chromatin associated protein KTI12 49 76 IPR013641 -
Blo16g01091 255 PANTHER BNAC08G40070D PROTEIN 77 254 - -
Blo16g01091 255 PANTHER BNAC08G40070D PROTEIN 48 76 - -
Blo16g01091 255 MobiDBLite consensus disorder prediction 1 37 - -
Blo16g01091 255 MobiDBLite consensus disorder prediction 17 37 - -
Blo16g01091 255 MobiDBLite consensus disorder prediction 1 16 - -
Blo16g01091 255 PANTHER UNCHARACTERIZED 48 76 IPR045106 GO:0002098|GO:0006357
Blo16g01091 255 PANTHER UNCHARACTERIZED 77 254 IPR045106 GO:0002098|GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01091 K15456 KTI12; protein KTI12 - cpap:110824182 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01091 Blo-Chr16:39422069 Blo17g00224 Blo-Chr17:2307739 5.16E-07 dispersed
Blo16g01091 Blo-Chr16:39422069 Blo07g01173 Blo-Chr7:31606779 3.57E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g65 . Blo16g01091 . Bda11g01182 Bpe13g01380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01182 . Bpe02g02319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011629 1 3 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 2 0 1 2 1 1 1 0 0 0 2 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01091 Blo_Chr16 FPKM 11.506841 11.032833 24.606419 21.76413 7.612583 7.489801 9.022568 26.335735 31.062309 29.6703