Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01097 ATGTATAGGACTGTAGCTACAGCGGCTGCTTCGACCACAACCGCGACGGTGAGCAGAGGCGGATCGCCGTCGGATAATGTGGATTATGTGGTTACTTTGGATCAAGTTCCGTGGTGGAGCGATGCAGAATATAGATCTTCATTGGAATTTGACGGCGAAGATCCTTCTTTCTCTAATTCACACTTCCCTGATCCTCTGACCTCATTGTCTGGGGCGGAGAGCGGTATAAATGGAATGCTTTCGAGGTTTCCAGTTGATCAAGAAATTAATTCCAAGATATATCTTTGGAGAGGGAATCCGTGGAATCTTGAGGTAGATGCCGTTGTCAATTCTACGAATGAGAGTTTGGATGAAGCACACAGCAGCACAGGGTTGCACTCTGCAGCTGGATCTGGTCTTGCCGAAGAATGTGCCTCACTGGGCGGTTGCCGTACTGGGATGGCAAAAATAACTAACGCATATGACCTTCCAGCTAGGAAAGTCATACATACAGTCGGCCCAAAGTATGCAGTAAAGTACCATACTGCAGCTGAAAACGCTTTAAGTCATTGCTATCGATCTTGTCTTGAACTTTTCATCGAAAATGGGCTTCAAAGCGTTGCTATGGGCTGTATATACACTGAGAATAAAAACTATCCTCGTGAACCTGCTGCACATGTGGCTATAAGGACCGTGCGAAGGTTTCTTGAGAAGCAAAAAGATAAAATTAAAGCAGTTGTATTTTGTACTGCTACATCATCAGATACTGAGATATATAAAAGGCTGCTTCCGCTTTACTTTCCACGTGATAAACATGAAGAGGAAGTTGCTTTATCAAAACTTCCGGCAGATGTAGGAGATGAGAATGGCGAGACTGTTATAGATGAACGGAAGATTAGGATAAAGCCTTTGCCGAAGAAAAATATTCCAAAACCTCCTCCCCAAGCTCTAGATGATCCTCCTGTTAGTAATGTTGGCTTGGCACGTAGGAGTTCGTCGTATTTGGATTCATATTTGGATCCTGCTTTTATGTCTTTAATTAAAGACCCAGATCAGAGACGGAGAGAGCAATGGGAAAAAACTGCCCAGGCACAGAGTGGATGGAATTGTGCAAAAATGTTCGGATTTGGTGACCTTGGTGGGCCTCCACTATCTGCTGCTGAAGAATACTCACTTCATTCAAGATTTCTTGCCAAAGCAAATTCTCTTAACTTGTCCGAAATTGCAGAAATGAAAATAATTTATCGCGGTGGAGTCGATAGTGAGGGCCATCCTGTAATGGTTGTTGTGGGAGCCCATTTTTTGTTGCGATGTCTTGATCTAGATCGATTTGTTCTTTATGTCATAAAGCAGTCATTTAAACTAAGATTTTCCCTTCATGCAATATATGTTCTTCATCCATCATTTGGACTAAAGGCTACAATTTTCGCTTTGCAACTGTTTGTGGACAATGCGGGATGTTTCTTATCCAGCAAACCCACAATGTTTAGACAGAGAAATTGTAAAGTTGAAGCTGGGTGGCTGTTCAAAGGGAGTGGACAAGGTTTGGATGCAAATTCTGAGCGTAGTGAGAGTGCTAATCAAGATATTTTGATCTTCTTTTTCCAGCTTGATCTGGAAACCCGAGTACAGTATGCCTTGAATCTGGAGCAATATGAAATTGCTCAACAACTGAGAAGCAAGATTACGGAGGTTGAAGCAGAAATGAGCAGACGACTAGAATCAAAAAGTGGACTGTCTTCAAAGAGTGAAGTGCAGGACAAAGCTTTAAGTATCATTCGACTACGGTGTGTTTCACAAATATCCATTCATGTATCTGCTTTCAATGTGTTGGGTCTTCTTGCGCGATTCATTTATTTATTTTTAATTAACAGTGCAGATCTGCAGAATGCTATTGACAGTGAAAATTATTCATTGGCAGCTCAACTACGGGATGAAATTTCCAATTTGGAGGCAGAATCTCTTGCTGCTTCAGCAAAAGCTCTGGTATATGAAAATGCAAATTATTCATTTCGCCTTGGACAGAAAGTGAAGCACAAAATCTTTGGATATAAAGCTGTAGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGCCAATGGAAGGAGGCTGCCCGTGTTGAAAAGTTGTCACGTGGTTCTAATCAGCCATTTTATCAGGTTTTGGTGGATGTTCATGCCGACCCTGATCTAATGGTGGCATATGTTCCTGAAGAAAATCTCTTATCCCCTGAGAAACCTGGCAAGCTGGTGACTTCATTCCTATCAAACAACTGCGCGAGAAGTACAACCGGCCTCGACATGAAATACCGATGGATCTCGAAGACGGAGAACAAGGTGGTTAAACTTGAAACATCAACGACCGTTGCCCGTTCGCTTTTTGTTGACGAAGAGATTTTGCTTTTTCTTTTGATTGGACGGGCTGTGATCAACGGCATGGGGAGGGAGAAGAAAGGATCAGAGGCCGTGATTGTATGCGCCGCTTTCTGTCTCTCTTTTCTGCTGGTTCAATATTGTTTCCCGTCGTCCTCGCCGTCGTCCTCTCCAACGTTCAACGTAGAGAAGCTCCCCCTGTCGATAACTCAAGAATCTGCTTTCTTGTTCTTCCCCTACACTTCGTCGTCGTCGTCTTCTTCTTCTTCTTCTTTGGTTGCTGTTCTTCCTCTGAATATTCCTGAAACAGCTGTGGAAGAAAAAGTGGACCCACTTTCATGGCGACCAATGAAATGCGACAGGACCCACAACTCCTACGATCTTTGCACTGTCAACGTGGCCACCGTCATGGACCCCACCACCTCCACGTTTTCTGTGATGGACCCCACCTGGGGGACCCTACAATTGGTTGAGAAAATTCGTCCATACCCAAGAAAAAAGGAAAATAATATCATGGGAAGTATCAGAAACCTCAGAATCTCCTCGGACCCTCCACCAAAACAATGCCAAATTTACCATAATCTCCCTGCCCTCGTATTCAGTGCGGGAGGGTACACGGGAAACTTCTTTCATGATTTCAACGACGGGTTCATTCCTCTCTTCATCACCGTCAGTTCTTTTTATCAGAATCAAGATTTTGTCCTCGTCATATCAGGGGCTCGTGATTGGTGGATCTCCAAGTATAAACATATTCTACAAGGGTTTAGCAAGCACCCGATTATAACCTTCGATAATGATACTTCCACCCATTGTTTTCCTTCTGCCACCCTCGGCCTCATATCACATGGATACTTAGCTATTGATCCAAATCTAATACCAACCTCAAAAACATTAACCCATTTTAGATCATTCCTAGCCGAAGCCTTCGAACCGCATATTCCACCCACTGCTCGCCTGTCCACATCCCGGCCCCGGCTCGTGTTGCTCAGTCGAAAGTTTCCAGCCAGTCGGGTCCTCCTGAACGAATTCGAACTAAAGAATCTCGCAGAATCAATAGGATTTGATGTGACGCTATTCACTCCATCTAGTGAAATTTCGCTTACCAATGCTTATGGTATAATCAACTCGAGTCAAGTAGTCGTTGGGGTGCATGGTGCAGCATTGACGCACTTCTTGTTCATGCGTAGAGGCTCAGTGCTAGTGCAGGTGGTGCCACTGGGGACGGAGTGGGTGTCGAAGGCGTGCTACGATAAGTCTGCTCGGGACATGGGATTAGAATATATGGAGTATAGAATCCATGCAAACGAAAGTAGTTTGATAGAGAAATATGGGGAGGAGGAGGAGATTATAAAGAATCCAGCAGCTTATAGGGGAAAGACTTGGTCTCATATGAATGTTTATTTGAAGGAGCAAAATGTTAGATTGGACTTGACCAGATTCAGGGAGTACTTAGAAGAAGCTTATAGGAAGGCTAAGAAGTTAATGGAAAATGGGGCTGTGTAA 3855 43.84 MYRTVATAAASTTTATVSRGGSPSDNVDYVVTLDQVPWWSDAEYRSSLEFDGEDPSFSNSHFPDPLTSLSGAESGINGMLSRFPVDQEINSKIYLWRGNPWNLEVDAVVNSTNESLDEAHSSTGLHSAAGSGLAEECASLGGCRTGMAKITNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELFIENGLQSVAMGCIYTENKNYPREPAAHVAIRTVRRFLEKQKDKIKAVVFCTATSSDTEIYKRLLPLYFPRDKHEEEVALSKLPADVGDENGETVIDERKIRIKPLPKKNIPKPPPQALDDPPVSNVGLARRSSSYLDSYLDPAFMSLIKDPDQRRREQWEKTAQAQSGWNCAKMFGFGDLGGPPLSAAEEYSLHSRFLAKANSLNLSEIAEMKIIYRGGVDSEGHPVMVVVGAHFLLRCLDLDRFVLYVIKQSFKLRFSLHAIYVLHPSFGLKATIFALQLFVDNAGCFLSSKPTMFRQRNCKVEAGWLFKGSGQGLDANSERSESANQDILIFFFQLDLETRVQYALNLEQYEIAQQLRSKITEVEAEMSRRLESKSGLSSKSEVQDKALSIIRLRCVSQISIHVSAFNVLGLLARFIYLFLINSADLQNAIDSENYSLAAQLRDEISNLEAESLAASAKALVYENANYSFRLGQKVKHKIFGYKAVVCGMDPVCCESSQWKEAARVEKLSRGSNQPFYQVLVDVHADPDLMVAYVPEENLLSPEKPGKLVTSFLSNNCARSTTGLDMKYRWISKTENKVVKLETSTTVARSLFVDEEILLFLLIGRAVINGMGREKKGSEAVIVCAAFCLSFLLVQYCFPSSSPSSSPTFNVEKLPLSITQESAFLFFPYTSSSSSSSSSSLVAVLPLNIPETAVEEKVDPLSWRPMKCDRTHNSYDLCTVNVATVMDPTTSTFSVMDPTWGTLQLVEKIRPYPRKKENNIMGSIRNLRISSDPPPKQCQIYHNLPALVFSAGGYTGNFFHDFNDGFIPLFITVSSFYQNQDFVLVISGARDWWISKYKHILQGFSKHPIITFDNDTSTHCFPSATLGLISHGYLAIDPNLIPTSKTLTHFRSFLAEAFEPHIPPTARLSTSRPRLVLLSRKFPASRVLLNEFELKNLAESIGFDVTLFTPSSEISLTNAYGIINSSQVVVGVHGAALTHFLFMRRGSVLVQVVPLGTEWVSKACYDKSARDMGLEYMEYRIHANESSLIEKYGEEEEIIKNPAAYRGKTWSHMNVYLKEQNVRLDLTRFREYLEEAYRKAKKLMENGAV 1284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39453575 39469392 + BLOR21884 Blo16g01097 72288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01097 1284 TIGRFAM yccV: hemimethylated DNA binding domain 662 743 IPR011722 GO:0003677
Blo16g01097 1284 Pfam Macro domain 109 221 IPR002589 -
Blo16g01097 1284 MobiDBLite consensus disorder prediction 296 316 - -
Blo16g01097 1284 ProSiteProfiles Macro domain profile. 80 260 IPR002589 -
Blo16g01097 1284 CDD Macro_GDAP2-like 91 259 IPR035793 -
Blo16g01097 1284 Pfam Glycosyltransferase 61 1080 1185 IPR007657 GO:0016757
Blo16g01097 1284 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 449 478 - -
Blo16g01097 1284 SMART YBR022w_8 92 221 IPR002589 -
Blo16g01097 1284 Gene3D - 660 759 IPR036623 GO:0003677
Blo16g01097 1284 Gene3D Leucine Aminopeptidase, subunit E, domain 1 22 265 IPR043472 -
Blo16g01097 1284 Coils Coil 633 653 - -
Blo16g01097 1284 Gene3D - 396 449 IPR036865 -
Blo16g01097 1284 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 449 478 - -
Blo16g01097 1284 Coils Coil 1261 1281 - -
Blo16g01097 1284 Pfam UvrB/uvrC motif 619 645 IPR001943 GO:0005515
Blo16g01097 1284 Pfam Hemimethylated DNA-binding protein YccV like 663 739 IPR011722 GO:0003677
Blo16g01097 1284 SUPERFAMILY YccV-like 662 741 IPR036623 GO:0003677
Blo16g01097 1284 SUPERFAMILY Macro domain-like 83 289 IPR043472 -
Blo16g01097 1284 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 11 444 - -
Blo16g01097 1284 SMART YccV_like_2_a 661 757 IPR011722 GO:0003677
Blo16g01097 1284 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 11 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01097 K24997 GDAP2; ganglioside-induced differentiation-associated protein 2 - mnt:21400244 779.245
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00446 Blo16g01097 BCT
Blo01g00392 Blo16g01097 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01286 Blo-Chr1:49369255 Blo16g01097 Blo-Chr16:39453575 1.34E-81 dispersed
Blo04g00836 Blo-Chr4:8982244 Blo16g01097 Blo-Chr16:39453575 9.76E-66 dispersed
Blo12g00574 Blo-Chr12:23981684 Blo16g01097 Blo-Chr16:39453575 1.02E-82 dispersed
Blo04g00188 Blo-Chr4:1520077 Blo16g01097 Blo-Chr16:39453575 3.72E-18 transposed
Blo01g00446 Blo-Chr1:4921222 Blo16g01097 Blo-Chr16:39453575 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
Vvi1g984 Blo01g00392 Blo16g01097 . Bda11g01191 Bpe13g01388 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01191 . . . Bma06g00724 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01097 Blo_Chr16 FPKM 46.23484 45.62072 25.578302 25.787197 7.338023 7.001903 7.371417 29.017927 28.363583 31.18091