Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01110 ATGGAGGAACCGACCTCATCGATCTGTAACCTAGGTATTTTAGACAAACTCAGTGACTGCACAATTCAAGAGTTACTTCATAGCTACGACGGATTCTTCAAAACCACGGAGCATCTCTTAAATGGCGGTCCCATTCTTTCTGTACATTCAGAGTTCGTAGCTCATGTTCACTCTCTATGCAGTCACGGCCTCGTCTCTCTGGTTTGCGATCACTTTCTTCGCACACTTGAGAAAAGCTTCGAAAAGCAGGGGGCTTCCAGATTTTGGATGCATTTCCAGGCTTATGGGGATTCTTCGCTTCTAATCAGCGATAACCCCATTGTATGTACTTCTATCGATTTACCAATTGTTGCATTTACCATCGAAAATTCTGCTATTAATTGTATTTTCTTGCATGAACAGAGCTCGAAGTATGAAGTTCAGGAAGTTCTATGCAAAGCTTTGGAAGAGATATCTTCGGAAAAGAAATATCTGGAAGATTGTTTGTCGACACTGGTTGATTCTTTGCAGACATGGAAGGACAATGTATCAGAAGGAAATCACAGTTCATATACAGAAAGATCATATCTCATGGCTAAGCTTCAGTACCTTATTTCCTCAGTCCTTATGGCTTCTCTCCCCCGCCATTTTCCAGACATACTCCACTGGTACTTTAAAGGAAGATTGGAGGAGTTGAACACAATCATGGCAGGTGAGCCAAATGGCGGTCTTGAATCTCAAAGTGGAGACGACATGGATTTGGATAAAAAAAGCGAAAGTTTAAATTCAGATAAGTTGGATGATGATGAGTTCCATCAGCAAGAGTTCTGTGATGTCGGTAAATTAGTGAAGAACATTGGAAAGGTCGTTTGTGATCTTAGAAACCTCGGTTTTACATCTTTGGCGGAAGATGCCTACGCCTCTGCCATATTTTTGCTTCTAAAGGATAAAGTGCATGAACTTGCCAGTGATGATTATAGAAGTTCTATATTGGAGTCTATAAAAGGGTGGATTAAGGCTGTTCCCCTCCAGTTTCTCCATGCCCTTCTCGCATATCTCGGAGAATCTGACAGTAAACATAGTTCTTTGTCCTGTCTGAAATCGCATTTAGCTACCAACTTGTCTTCATCCCATTCTGGGCTAAATACTTCTTCTGAAGTACTTGTGAGATGGCAGTTGCGATTGGAATATTTTGCTTATGAAACACTCCAAGATTTGAGAATAGCCAAACTGTTCGAAATAATAGTGGATTATCCTGAGAGCTCTCCTGCAATCGAAGATCTTAAGCAATGCCTTGAATATACTGGACAACACTCTAAGCTAGTTGAATCGTTCATCTCATCATTGCAATATCGCCTGCTCACTGCAGGTGCCTCAACGAATGATATATTGCATCAATATGTTTCGACCATTAGAGCACTCCGCACTATAGACCCAGCAGGGGTTTTTCTTGAAGCAGTTGGTGAACCAATACGGGACTATTTAAGACGAAGAAAAGATACCATTAAATGCATTGTAACCATGCTAACCGATGGAACTGGTGGAAATCCAAACGCATCTGGAAATACAGGTGATAGCCTTCTTGAAGAATTAAACAAAGATGAAGAAAGTCAAGATAATACTGGTATTTACGATGACTTTCACACTGATGATAAGCAAGCTTGGATAAATTGTAGTTGCTGGGAGCCTGACCCTGTCGAAGCTGACCCATCAAAGGGAGGCAGAGCTAGAAGGAAGGTTGACATACTTGGAATGCTTGTTAGTATAATCGGTTCGAAAGACCAACTAGTGAATGAATATCGAGTAATGCTTGCCGAAAAGCTTCTAAACAAATCTGATTACGATATCGATTCAGAGATACGCACTCTAGAACTTCTTAAGATACATTTTGGAGAAAGCAGTATGCAGAAATGTGAAATTATGCTGAATGATCTGATTGATTCGAAGAGGACAAACTCAAACATTAAAGCAACCATAAATAAGCTTTCTAAGACAGCTGTCGAGCTCCAGGAAAGTGCTGCATCAATGGAAAAGCTGGATGCAACAATCATATCTTCAAATTTCTGGCCGCCAATTCAGGAAGAGAGCCTTACCCTACCTCCACAAATTGACAATCTGCTTTCTGATTATGCAAAGCGATTTAATGAAATCAAGACCCCTCGGAAGCTACAGTGGAAGAAAAATTTGGGAACTGTAAAGTTGGAATTGCAATTTGAAGGAAGAGAAATACAGTTCACAGTTGCTCCAGTCCATGCGGCAATTATCATGCAATTTCAAAATCAAACAAGCTGGAGCTCCACAACCCTTGCAGCTGCTGTTGGTTTGCCGGCAGATATCCTCAACCGGAGGATAAATTTCTGGGTTAGTAAGGGAATCATTGCAGAATCACTTGGGGTAGACTCTAACGACCATGTCTATACACTCATGGAAAGCGTGGCTGAGTCTAGTAAGAATGGTGCAAACCACGACAATTGCGACGGGGAGCTTTTAATAGGCGATGAGGAGGGAGAGAGATCCGTCACCTTCGTGGAGGACCAGCTGCGCAAGGAAATGACTGTGTATGAGAAGTTTATCCTTGGTATGCTCACAAATTTCGGAAGCATGACGCTGGATCGGATTCACAATACCCTCAAGATGTTCTGTGTTGCCGACCCATCCTACGACAAATCTCTCCAGCAGCTGCAAAGCTTTTTGTCTGGGCTTGTTTCTGAAGAGAAGTTGGAGCTAAAAGATGGCGTCTACATCTTGAAAAAATAA 2736 41.74 MEEPTSSICNLGILDKLSDCTIQELLHSYDGFFKTTEHLLNGGPILSVHSEFVAHVHSLCSHGLVSLVCDHFLRTLEKSFEKQGASRFWMHFQAYGDSSLLISDNPIVCTSIDLPIVAFTIENSAINCIFLHEQSSKYEVQEVLCKALEEISSEKKYLEDCLSTLVDSLQTWKDNVSEGNHSSYTERSYLMAKLQYLISSVLMASLPRHFPDILHWYFKGRLEELNTIMAGEPNGGLESQSGDDMDLDKKSESLNSDKLDDDEFHQQEFCDVGKLVKNIGKVVCDLRNLGFTSLAEDAYASAIFLLLKDKVHELASDDYRSSILESIKGWIKAVPLQFLHALLAYLGESDSKHSSLSCLKSHLATNLSSSHSGLNTSSEVLVRWQLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLQYRLLTAGASTNDILHQYVSTIRALRTIDPAGVFLEAVGEPIRDYLRRRKDTIKCIVTMLTDGTGGNPNASGNTGDSLLEELNKDEESQDNTGIYDDFHTDDKQAWINCSCWEPDPVEADPSKGGRARRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINKLSKTAVELQESAASMEKLDATIISSNFWPPIQEESLTLPPQIDNLLSDYAKRFNEIKTPRKLQWKKNLGTVKLELQFEGREIQFTVAPVHAAIIMQFQNQTSWSSTTLAAAVGLPADILNRRINFWVSKGIIAESLGVDSNDHVYTLMESVAESSKNGANHDNCDGELLIGDEEGERSVTFVEDQLRKEMTVYEKFILGMLTNFGSMTLDRIHNTLKMFCVADPSYDKSLQQLQSFLSGLVSEEKLELKDGVYILKK 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39564527 39570618 + BLOR21897 Blo16g01110 72301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01110 911 SMART cul_2 574 731 IPR016158 -
Blo16g01110 911 Pfam Anaphase promoting complex (APC) subunit 2 850 907 IPR014786 -
Blo16g01110 911 SMART APC2_2 850 909 IPR014786 -
Blo16g01110 911 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 127 911 IPR044554 -
Blo16g01110 911 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 14 98 IPR044554 -
Blo16g01110 911 MobiDBLite consensus disorder prediction 232 252 - -
Blo16g01110 911 PANTHER BNAC04G32030D PROTEIN 127 911 - -
Blo16g01110 911 PANTHER BNAC04G32030D PROTEIN 14 98 - -
Blo16g01110 911 SUPERFAMILY Cullin homology domain 550 789 IPR036317 -
Blo16g01110 911 Pfam Cullin family 572 777 IPR001373 GO:0006511|GO:0031625
Blo16g01110 911 Coils Coil 645 672 - -
Blo16g01110 911 Gene3D - 826 911 IPR036388 -
Blo16g01110 911 Gene3D Cullin; Chain C, Domain 2 670 810 - -
Blo16g01110 911 Gene3D Cullin Repeats 518 655 - -
Blo16g01110 911 SUPERFAMILY Winged helix DNA-binding domain 840 909 IPR036390 -
Blo16g01110 911 ProSiteProfiles Cullin family profile. 578 781 IPR016158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01110 K03349 APC2, ANAPC2; anaphase-promoting complex subunit 2 - qsu:112005549 1280.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00587 Blo-Chr11:5753132 Blo16g01110 Blo-Chr16:39564527 1.69E-10 dispersed
Blo11g00590 Blo-Chr11:5808582 Blo16g01110 Blo-Chr16:39564527 3.64E-10 dispersed
Blo16g01110 Blo-Chr16:39564527 Blo01g00939 Blo-Chr1:22623680 1.18E-06 dispersed
Blo16g01110 Blo-Chr16:39564527 Blo11g00241 Blo-Chr11:1931193 1.30E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g937 . Blo16g01110 . Bda11g01210 Bpe13g01404 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0944 Cone19ag0936 . . . . . . . . . Bda11g01210 . . . Bma06g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010260 1 2 1 2 1 1 1 1 1 1 1 1 1 0 1 1 1 2 0 1 1 0 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01110 Blo_Chr16 FPKM 2.196059 1.89803 3.928073 3.518993 28.494137 21.005383 30.179865 3.863684 3.987057 4.0042