Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01120 ATGGAGTCCTGTATTCTCAGATGTTCTCAAAGCCATGCTCTCTTCTGCGGAGCCTTCAAACCTATGCGTCTTAGTGGACAATCCTCTGTGAAGCGATTATACGACGCATTGTTGTTGGATGCTGGAGGAACACTTTTGCAGTTGGCTAAACCAGTAGAGCTGACATATGCAGAAATCGGTCGCAAATACGGTATAACAGCTACTCCTGCTCAGATAAAGCAAGGATTTAAGAGAGCTTTTAGTGCTCCATGGCCAGAAAAGCTTAGATATCTGGGGGATGGAAGGCCATTTTGGAAACTTGTCGTTTCGGAAGCCACTGGTTGTGCTGATAGTGATTATTTTGAAGAAGTATACCAGTGCTATGCAGAAGGTGATGCATGGCATCTCCCAGAAAAAGCTCAAGAAACCATTATTCTACTCAAAGATGCAGGAGTGAAGGTAGTTGTAGTGTCCAATTTCGACGTGCGATTAAGGAAGCTATTGAAGGACCTAAATGTTTTAGATTTGTTTGATGCTGTGATAATATCTTCTGAGGTTGGATATGAAAAACCAGATGAAAGGATATTTAAAGCTGCTCTAGAACAAATCAATGTGGAGGCTGGTAAAGCAATCCATATTGGTGATGATGAAAAAGCAGATAAAGATGGGGCAAATGCTGTTGGAATTGCTTGCTGGTAA 678 41.89 MESCILRCSQSHALFCGAFKPMRLSGQSSVKRLYDALLLDAGGTLLQLAKPVELTYAEIGRKYGITATPAQIKQGFKRAFSAPWPEKLRYLGDGRPFWKLVVSEATGCADSDYFEEVYQCYAEGDAWHLPEKAQETIILLKDAGVKVVVVSNFDVRLRKLLKDLNVLDLFDAVIISSEVGYEKPDERIFKAALEQINVEAGKAIHIGDDEKADKDGANAVGIACW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39683740 39686604 + BLOR21907 Blo16g01120 72311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01120 225 Pfam Haloacid dehalogenase-like hydrolase 114 224 IPR041492 -
Blo16g01120 225 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 138 221 IPR006439 -
Blo16g01120 225 Gene3D - 38 223 IPR023214 -
Blo16g01120 225 SUPERFAMILY HAD-like 34 224 IPR036412 -
Blo16g01120 225 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 37 223 IPR011949 -
Blo16g01120 225 PANTHER - 21 225 - -
Blo16g01120 225 CDD HAD_dREG-2_like 133 225 - -
Blo16g01120 225 PANTHER F14L17.7 PROTEIN 21 225 - -
Blo16g01120 225 SFLD Haloacid Dehalogenase 34 225 - -
Blo16g01120 225 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 140 153 IPR006439 -
Blo16g01120 225 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 188 208 IPR006439 -
Blo16g01120 225 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 34 45 IPR006439 -
Blo16g01120 225 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 170 186 IPR006439 -
Blo16g01120 225 Gene3D - 50 122 IPR044924 -
Blo16g01120 225 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 34 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01120 - - - qsu:112001506 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00646 Blo-Chr8:25289965 Blo16g01120 Blo-Chr16:39683740 4.96E-09 dispersed
Blo09g00371 Blo-Chr9:14454212 Blo16g01120 Blo-Chr16:39683740 1.07E-47 dispersed
Blo16g01120 Blo-Chr16:39683740 Blo07g01227 Blo-Chr7:32302957 2.12E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g897 . Blo16g01120 . Bda11g01221 Bpe13g01415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0595 Cone9ag0598 . . . . . . . Bda11g01221 . . . . . . . . . . . . Cpe07g00653 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006918 1 1 1 0 1 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01120 Blo_Chr16 FPKM 19.919586 21.073847 16.122204 14.868127 14.355445 14.407372 14.727026 14.020203 15.163589 15.566043