Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01121 ATGGATGGTGAAAATGGGACGCTCCGAAGGGCTAATTTTCCACTTCAATTGTTAGAGAGGAAAGAAGAGCAACAGCAGCAACAATCTTCAAGCTCCATCTATGGCGGAACTGGAGATCATCTTCAACCCTCTACAAACCCTATCATGGAACCACCCAAAAAGCCTCCCCCAAAAAGAACCTCCACCAAAGACCGCCACACCAAGGTCGACGGCCGTGGCCGACGGATCCGCATGCCGGCCGCCTGCGCCGCTAGGGTATTCCAGCTCACCCGTGAACTTGGCCACAAGTCCGATGGCGAAACCATAGAGTGGCTCCTGCAGCAGGCCGAACCCTCCGTCATAGCTGCCACAGGAACCGGAACGATTCCGGCGAACTTCACCTCGCTTAACATCTCTCTCCGAAGCTCCGGTTCCACCCTTTCAGCTCCGTCGCACTTGAGGAGCAGTTATTTCAGTCCGACCACCTTCGCCGAATCGCAGATGAGAGCTCGGAGCGACTGGGAGAGAAACATAATGGAAGAGTCTCACCGGCGATCTTTGTTTCCTGCCGAAAACTCACCGGCGTTCTTGAATTTCAAACACGAGCTACACGAGAATACCCTAGATGTGACGGATTCCGAGGTATGTGAAGGTAGAAAACAAGGGTTAACGCATAATCAAATGCCAGGAAACTACATGTTACAGTCAAGTACTGGTTCGATTCCGGCGACTCAGAGTCAAATTCCGGAGACGCTTTGGATGATGACCAATTCAAACACTCAAGTAATGACTGGTTCTGATCAGATATGGACATTTCCTTCTCTCACTAACTCTAGTCTGTATAGAGGGTCTGGATTACATTTTATGAACTTTTCTCCTCCCATGGTGGCTATGTTACCTCCACAACAACTCAACTCCCATGGAAGTAGCTCCGTCACAGACACCCACTTGGGCGTTCTCGCCGCTCTCAACGCATTTCGGCCGATTCCGTCAAGTTCTCAGCCAGCATCGGAATCTACGGCCATTACAGCTCTTAAGAAAGGCGCATATTTGTTGAAGTACGGACGAAGAGGGAAGCCAAAGTTCTGCCCGTTCAGACTTTCAAATGATGAATCTTTACTCATATGGTACTCTGGAAAGGAAGAGAAACACCTAAAAATAAGTCATGTTTCAAAGATTATTCCTGGACAATGCACTGCAATATTCCAGCAGTATCCTCGGCCTGAAAAGGAGTATCAGTCCTTTTCACTTTTATACGGTGATAGGTCCCTTGATTTGCAGATATGCAAAGACAAGGATGAGGCTGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTAGTCGAGGAAATCTACGCAGGTGGAGAAGTGATTATAGATGTAACAGTGTTTCATCAGATAGTCCACGTACTCGCACCAAAAGAAATTCTCCTTCGGTTACTCCATTTGATCCTGGAGATACTGAAGGGAGTCATTTTGAGAACATTTCACAAAGTAGACTAGGAAAAGCATTTTCTGAAATATTAACGTATACTGCTGTTACCAGAAGTATCAGTCAGCCTGAATTGGTTACTAATCCCTCTCTCTCAGCTGGGTCTGTAGAGAACTCAAATGGGAGAAGTTCTGCGTCTGACGGGTTTCGGATTAGTTTATCTAGTGCAGTAAGTTCTTCGAGCCAAGGTTCTTGTCCTGAAGATTTTGACGCTTTAGGTGATGTATTCATCTGGGGAGAAGGTATTGAGGCAGGATTGCTGGGGGGTGGCTTGCATAGAGTTGGGAGTTCAACTGATTCCAAGCTGGATGCTCTTCTACCTAAGGCGTTGGAGTCATCAATGGTTTTAGATATCCATGGCATTGCTTGTGGTGGTAGACATGCTGTGATAGTCACCAGACGAGGAGAGATTTTCAGTTGGGGAGAGGAGTCAGGAGGGAGGCTTGGACATGGTGTAGATGCTGATGTTTCTCATCCAAAGATCATTAACAGTCTTAGTGGAATGAATATTGAATCAGTAGCTTGTGGGGAGTATCACACATGTGCTGTTACGTATTCAGGGGACCTTTACACATGGGGAGGTGGAACTCACCCTTTCGGACTGCTTGGTCATGGCAGCGAAGTTAGTCATTGGATTCCGAAAAAGGTATTTGGTCGTATGGAGGGTATACATGTCTCATATATTTCGTGTGGTCCTTGGCATACAGCTGTTGTGACATCTGCCGGGCAGTTGTTCACATTTGGGGATGGATCATTTGGTGCTCTCGGACATGGCAATCGTAGTAGCATAAATACCCCGCGAGAAGTAGAAACTTTAAGAGGTCAAAGAATAACAAAAGTTTCTTGTGGTGTTTGGCATACTGCTGCTGTTGTCGAAGTAATTAATGAATCATCTAGCTCTGTTTCAGGTAAGTTTACAACTGGAAAACTGTTCACCTGGGGGGATGGAGATAAAGGACGTCTTGGGCATGGCGATAAAGAAACTAGACTAGTTCCTGAATGTGTAGTTGCATTAGCGAGTGAAAATGTTTGTCAGACTGCATGTGGTCTCAATCTCACTGTTGTTCTAACAACTTCAGGACAAGTATATACAATGGGAAGTGCCACTTATGGACAGTTGGGCAGTCCTATGGCTGATGGGATGATTCCCATGCGCGTCGAAGGGAACCTTTCCAACAATTTTGTTGAAGCGATTGCATGTGGTTCTTATCATACTGCAGTTTTGACTTCGAAAGCTGAGGTTTATACCTGGGGAAAAGGTTCGAATGGACAACTAGGCCATGGGGATAATGATCATAGAAATACACCTACTCTCGTTAATTCTCTTAAAGATAAGCAAGTAAAGAATGTGGTTTGTGGTTCAAACTTCACTTCTGTCATATGTCTTCATAAATGGGTATCTAGTGTGGATCATTCTATTTGCTCCTGCTGTCACAATGCATTCGGCTTTAGACGAAAGCGCCACAATTGTTACAACTGTGGGTTAGTATTTTGCAAAGCATGCAGCAGCAAGAAATCTCTGAAAGCTTCATTAGCTCCCAATACAAACAAGCCATATCGTGTATGTGATGAGTGTTTTAGTAAACTTAAGAAAGCTTTGGAAACTAATTCAGCTTTGCACAAGTCTAAAGTCAGAACTGGAAGTGTGCATAAAACTCACGATGTTGGAGATAGGGAAACATGGGCTCCGAAATTTCAAGGAACTCTCTCAAGACTTACATCTTTTGGCTCTCTCAATAATGCCGAAAGCAAGCATTTGAAGCATGATAAGGTGTTTTCTTCGTCTGTCCCAGTTTCGAGATTGGCTTCCCGGGGCACATCTCCTTTCTCAGGAATTTCTAGCCCATATATTTCATCTGAAGAACTTCTGCATTCAAAGAATACAAACGAAAGTTTAAGCCAAGAAATCATTATTTTAAGGGCTCAGGTAGAAAGTCTTAGTTGCAAATCCCAAAATCTTGAAGCAGAGCTTGCCAGAACATCAAGGCAACTGAAAGAGGTCACTATGGTAGCTGCAGATGAGGCTGAAAAATGTAAATCTGCAAAAGAAGTTATCAAATCTCTTACTGCTCAGTTGAAAGAGATGGCTGAAAGACTACCAGAAGAACAGACAGGTCAGCACTCTGTCAATCTAAATACCCTTGCGACAGAGAGCAATTCTATGAGCATGAACACTGATGCCAGGTCCAATGGCAACTTAACACATCCACCAAATGGAGAAGTTCAATCTGGAAAGGGAGAATCGGTGATCCAAGATGAACCAGGCGTATACATAACTTTGTCCCCTCTGCCAGATGGTGGCTGTGAGCTCAAACGTGTGCGCTTCAGAAACTTACTGATAGCGCTAATGGCATCAGGCAACACAATACCGCAAGGGAAAGATTTTCCTGCCATTTGA 3867 44.76 MDGENGTLRRANFPLQLLERKEEQQQQQSSSSIYGGTGDHLQPSTNPIMEPPKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTLSAPSHLRSSYFSPTTFAESQMRARSDWERNIMEESHRRSLFPAENSPAFLNFKHELHENTLDVTDSEVCEGRKQGLTHNQMPGNYMLQSSTGSIPATQSQIPETLWMMTNSNTQVMTGSDQIWTFPSLTNSSLYRGSGLHFMNFSPPMVAMLPPQQLNSHGSSSVTDTHLGVLAALNAFRPIPSSSQPASESTAITALKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKEEKHLKISHVSKIIPGQCTAIFQQYPRPEKEYQSFSLLYGDRSLDLQICKDKDEAEVWFVGLKALISRGNLRRWRSDYRCNSVSSDSPRTRTKRNSPSVTPFDPGDTEGSHFENISQSRLGKAFSEILTYTAVTRSISQPELVTNPSLSAGSVENSNGRSSASDGFRISLSSAVSSSSQGSCPEDFDALGDVFIWGEGIEAGLLGGGLHRVGSSTDSKLDALLPKALESSMVLDIHGIACGGRHAVIVTRRGEIFSWGEESGGRLGHGVDADVSHPKIINSLSGMNIESVACGEYHTCAVTYSGDLYTWGGGTHPFGLLGHGSEVSHWIPKKVFGRMEGIHVSYISCGPWHTAVVTSAGQLFTFGDGSFGALGHGNRSSINTPREVETLRGQRITKVSCGVWHTAAVVEVINESSSSVSGKFTTGKLFTWGDGDKGRLGHGDKETRLVPECVVALASENVCQTACGLNLTVVLTTSGQVYTMGSATYGQLGSPMADGMIPMRVEGNLSNNFVEAIACGSYHTAVLTSKAEVYTWGKGSNGQLGHGDNDHRNTPTLVNSLKDKQVKNVVCGSNFTSVICLHKWVSSVDHSICSCCHNAFGFRRKRHNCYNCGLVFCKACSSKKSLKASLAPNTNKPYRVCDECFSKLKKALETNSALHKSKVRTGSVHKTHDVGDRETWAPKFQGTLSRLTSFGSLNNAESKHLKHDKVFSSSVPVSRLASRGTSPFSGISSPYISSEELLHSKNTNESLSQEIIILRAQVESLSCKSQNLEAELARTSRQLKEVTMVAADEAEKCKSAKEVIKSLTAQLKEMAERLPEEQTGQHSVNLNTLATESNSMSMNTDARSNGNLTHPPNGEVQSGKGESVIQDEPGVYITLSPLPDGGCELKRVRFRNLLIALMASGNTIPQGKDFPAI 1288
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 39702350 39717226 + BLOR21908 Blo16g01121 72312

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01121 1288 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 332 1080 - -
Blo16g01121 1288 MobiDBLite consensus disorder prediction 453 476 - -
Blo16g01121 1288 SMART fyve_4 952 1021 IPR000306 GO:0046872
Blo16g01121 1288 Pfam Transcription factor BRX N-terminal domain 1163 1190 IPR027988 -
Blo16g01121 1288 SUPERFAMILY PH domain-like 334 439 - -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 677 731 IPR000408 -
Blo16g01121 1288 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1079 1266 - -
Blo16g01121 1288 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1079 1266 - -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 850 901 IPR000408 -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 902 953 IPR000408 -
Blo16g01121 1288 MobiDBLite consensus disorder prediction 56 73 - -
Blo16g01121 1288 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 718 728 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 839 857 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 718 734 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 627 643 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 734 748 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 897 918 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 677 693 IPR000408 -
Blo16g01121 1288 PRINTS Chromosome condensation regulator RCC1 signature 608 621 IPR000408 -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 625 676 IPR000408 -
Blo16g01121 1288 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 770 780 IPR000408 -
Blo16g01121 1288 ProSiteProfiles TCP domain profile. 62 116 IPR017887 -
Blo16g01121 1288 Pfam Regulator of chromosome condensation (RCC1) repeat 849 898 IPR000408 -
Blo16g01121 1288 Pfam Regulator of chromosome condensation (RCC1) repeat 732 780 IPR000408 -
Blo16g01121 1288 Pfam Regulator of chromosome condensation (RCC1) repeat 903 950 IPR000408 -
Blo16g01121 1288 Pfam Regulator of chromosome condensation (RCC1) repeat 798 846 IPR000408 -
Blo16g01121 1288 Pfam Regulator of chromosome condensation (RCC1) repeat 676 728 IPR000408 -
Blo16g01121 1288 Pfam Regulator of chromosome condensation (RCC1) repeat 625 673 IPR000408 -
Blo16g01121 1288 MobiDBLite consensus disorder prediction 19 44 - -
Blo16g01121 1288 SUPERFAMILY RCC1/BLIP-II 562 955 IPR009091 -
Blo16g01121 1288 ProSiteProfiles BRX domain profile. 1236 1288 IPR013591 -
Blo16g01121 1288 Pfam Transcription factor regulating root and shoot growth via Pin3 1237 1266 IPR013591 -
Blo16g01121 1288 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 888 898 IPR000408 -
Blo16g01121 1288 Gene3D - 514 686 IPR009091 -
Blo16g01121 1288 Gene3D - 687 788 IPR009091 -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 732 783 IPR000408 -
Blo16g01121 1288 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 958 1020 IPR017455 -
Blo16g01121 1288 MobiDBLite consensus disorder prediction 1 73 - -
Blo16g01121 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 968 1026 IPR013083 -
Blo16g01121 1288 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 332 1080 - -
Blo16g01121 1288 MobiDBLite consensus disorder prediction 453 485 - -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 798 849 IPR000408 -
Blo16g01121 1288 CDD FYVE_like_SF 964 1016 - -
Blo16g01121 1288 SUPERFAMILY FYVE/PHD zinc finger 954 1028 IPR011011 -
Blo16g01121 1288 Pfam FYVE zinc finger 954 1020 IPR000306 GO:0046872
Blo16g01121 1288 Gene3D - 789 967 IPR009091 -
Blo16g01121 1288 Coils Coil 1119 1188 - -
Blo16g01121 1288 CDD PH_PLC_plant-like 334 440 - -
Blo16g01121 1288 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 563 624 IPR000408 -
Blo16g01121 1288 Gene3D - 329 445 IPR011993 -
Blo16g01121 1288 Pfam TCP family transcription factor 60 163 IPR017887 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01121 - - - csv:101222790 1349.34
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00967 Blo-Chr3:35752574 Blo16g01121 Blo-Chr16:39702350 0 dispersed
Blo03g01390 Blo-Chr3:40378716 Blo16g01121 Blo-Chr16:39702350 0 dispersed
Blo04g00426 Blo-Chr4:3495247 Blo16g01121 Blo-Chr16:39702350 5.03E-37 dispersed
Blo05g00521 Blo-Chr5:9551003 Blo16g01121 Blo-Chr16:39702350 1.41E-28 dispersed
Blo06g00181 Blo-Chr6:7604980 Blo16g01121 Blo-Chr16:39702350 4.12E-28 dispersed
Blo15g00307 Blo-Chr15:3443093 Blo16g01121 Blo-Chr16:39702350 1.55E-86 dispersed
Blo16g01121 Blo-Chr16:39702350 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo17g00570 Blo-Chr17:10478760 Blo16g01121 Blo-Chr16:39702350 5.19E-37 dispersed
Blo19g00306 Blo-Chr19:19546337 Blo16g01121 Blo-Chr16:39702350 1.25E-29 dispersed
Blo13g00013 Blo-Chr13:195089 Blo16g01121 Blo-Chr16:39702350 2.88E-94 wgd
Blo16g01121 Blo-Chr16:39702350 Blo04g00768 Blo-Chr4:7327486 1.04E-63 wgd
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008880 1 4 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13469 PF03634 TCP 1.20E-36 No_clan Blo TF
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01121 Blo_Chr16 FPKM 5.759064 6.71985 10.257304 10.197604 5.534069 5.302485 5.204258 3.084354 3.37931 3.29547