Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01129 ATGCAGCGGCTACACTTGCTATCTTCTTCTTCTTCTTCATTAGCCGCTCCTCAAAACCCTGAAACTTGTCCTTTCCTTAAGCTTTCCTCCAACTATCCGTCTAGAAGCTTTGTTTTCAACTTCAATGCCTACCGGCCTCTTCCGACTCACTCCTCAAGAAGGAGGCTGTCTTTGAAATGCCGGTACTCTGAGTACTTCGACCAGCAGCAGAAGAAGCAGTCGGGGATCGACGCTGGAACTTCTCCGAGTAACAATTCTGCTCCACAGTCTCGGCCTGGAGCAGCTGGAGCATCTCCACCTAGGTTCTTCGTGGGTCATTCAATATACAAAGGGAAGGCAGCTCTTACGGTGGAGCCACGAGCACCAGAGTTTACTTCTCTAGACTCAGGAGCATTCAAGCTATCAAAGGAGGGCGTTGTCGTTCTTCAGTTTGCTCCCGCAGTTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTGTCAACGACAGAAATTGGGAGTCTTGTTGCCCTCGGCCCAAGAGAGTCGTGTGAATTTTTCCATGACCCTTTTAAGGGAAAAAGTGAAGAAGGGAAAGTTAGGAAGGTATTGAAAGTGGAGCCCCTGCCAGATGGTTCTGGTCATTTCTTCAACATCAGTGTTCAGAACAAGCTTATCAACATGGACGAGAGTATTTATATTCCCGTCACCAAAGCAGAATACGCTGTACTTGTGTCAGCATTCAATCAATACCTGAACAGTGGTGTTGCTAAAGATCACACAAAAATGACGGCCACTGCAACATTACTCGGGAGTCCTTCAACCCAAAACAACAGAAGAATCCACAATGTAGGAGTAGTGACCAAAAAGAAGAACCAAATTAATTCTCAAAATCACGCAAGAACAGTGAGCAAAATAGGGACCCAATACCTAATCGAGTTGCAAGGGGCTTTGATTCGTCTTCACAGAGACAGGGTGTTTCGCCAAGCTCGGGGAACCCTTCACAGAGCAGGGTTTGTCTTCACCCAACAGAAGGTCGCTTCACAGAGTCGGGCTTTGCTTCAAGCCGTCGTCTTCGCCTTCGTGCTTCGAAGAAAAGAGAAGAGCGAGTTTCGAAGAGGAGAGAAGAGTTGTTGCAGAGGTCTTCCGGAGATTAAAACAAACGGCAATAAACGGAAGGCTTTTAACTGTTTGAGTATGGTTTCTGCAGATTGGGATATGGATCTAGGGTTTTGTACGTTGATATGGCTGGAGGCGGTGAGGATGTCAACTCCTTCAAGAAAGAGACTGATGAGAGATTTCAAGAGGTTGCAACAAGATCCTCCAGCTGGAATTAGTGGTGCTCCTCAAGACAATAATATCATGCTTTGGAATGCTGTGATATTTGGACCTGATGACACACCTTGGGATGGAGGTACGTTCAAGCTGACACTTCAGTTTACGGAGGATTATCCAAACAAACCCCCCACTGTGCGCTTTGTTTCTAGGATGTTTCACCCAAATATTTACGCAGATGGGAGCATTTGTTTGGACATTCTTCAAAACCAGTGGAGTCCAATATATGATGTTGCTGCTATCCTCACCTCCATACAGTCGTTGCTCTGTGATCCAAACCCCAACTCTCCAGCAAATTCTGAAGCTGCTCGCATGTTCAGCGAGAACAAACGGGAGTACAACAGAAGAGTAAGAGAAATCGTCGAACAGAGCTGGACTGCCGATTAG 1710 46.32 MQRLHLLSSSSSSLAAPQNPETCPFLKLSSNYPSRSFVFNFNAYRPLPTHSSRRRLSLKCRYSEYFDQQQKKQSGIDAGTSPSNNSAPQSRPGAAGASPPRFFVGHSIYKGKAALTVEPRAPEFTSLDSGAFKLSKEGVVVLQFAPAVGVRQYDWSRKQVFSLSTTEIGSLVALGPRESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNISVQNKLINMDESIYIPVTKAEYAVLVSAFNQYLNSGVAKDHTKMTATATLLGSPSTQNNRRIHNVGVVTKKKNQINSQNHARTVSKIGTQYLIELQGALIRLHRDRVFRQARGTLHRAGFVFTQQKVASQSRALLQAVVFAFVLRRKEKSEFRRGEKSCCRGLPEIKTNGNKRKAFNCLSMVSADWDMDLGFCTLIWLEAVRMSTPSRKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39821002 39829267 - BLOR21916 Blo16g01129 72320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01129 569 Gene3D Transcriptional Coactivator Pc4; Chain A 93 250 IPR009044 GO:0003677|GO:0006355
Blo16g01129 569 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 421 567 IPR000608 -
Blo16g01129 569 SUPERFAMILY ssDNA-binding transcriptional regulator domain 100 248 IPR009044 GO:0003677|GO:0006355
Blo16g01129 569 Pfam Ubiquitin-conjugating enzyme 425 561 IPR000608 -
Blo16g01129 569 CDD UBCc 424 562 IPR000608 -
Blo16g01129 569 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 408 569 - -
Blo16g01129 569 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 408 569 - -
Blo16g01129 569 SUPERFAMILY UBC-like 411 567 IPR016135 -
Blo16g01129 569 Gene3D Ubiquitin Conjugating Enzyme 416 565 IPR016135 -
Blo16g01129 569 MobiDBLite consensus disorder prediction 69 92 - -
Blo16g01129 569 SMART ubc_7 424 567 - -
Blo16g01129 569 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 494 509 IPR023313 -
Blo16g01129 569 MobiDBLite consensus disorder prediction 69 97 - -
Blo16g01129 569 Pfam Whirly transcription factor 108 242 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01129 K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] - mnt:112091579 320.087
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00420 Blo16g01129 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01242 Blo-Chr3:38647699 Blo16g01129 Blo-Chr16:39821002 6.50E-19 dispersed
Blo11g00090 Blo-Chr11:701684 Blo16g01129 Blo-Chr16:39821002 1.12E-24 dispersed
Blo12g00810 Blo-Chr12:26465242 Blo16g01129 Blo-Chr16:39821002 5.30E-40 dispersed
Blo16g01129 Blo-Chr16:39821002 Blo15g00379 Blo-Chr15:5286804 6.62E-38 dispersed
Blo02g00109 Blo-Chr2:792224 Blo16g01129 Blo-Chr16:39821002 1.04E-09 transposed
Blo04g00314 Blo-Chr4:2469387 Blo16g01129 Blo-Chr16:39821002 3.31E-29 transposed
Blo04g01062 Blo-Chr4:15246956 Blo16g01129 Blo-Chr16:39821002 1.35E-28 transposed
Blo14g00289 Blo-Chr14:2890769 Blo16g01129 Blo-Chr16:39821002 2.23E-34 transposed
Blo01g00420 Blo-Chr1:4731886 Blo16g01129 Blo-Chr16:39821002 4.56E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g01129 BCT 10 245 Whirly Transcription Factor Family AT1G14410 61.4 5.2e-77 284.6
Blo12g00810 BCT 305 478 Whirly Transcription Factor Family AT1G71260 62.6 1.7e-58 223.0
Blo16g01129 BCT 51 245 Whirly Transcription Factor Family AT2G02740 69.9 2.5e-74 275.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13473 PF00179 UQ_con 2.50E-51 CL0208 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01129 Blo_Chr16 FPKM 0.0 2.990671 4.470947 5.660689 10.188148 9.371017 7.697486 5.237383 5.354748 6.400661