Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01131 ATGGCGGAATTTGGAGTTAAGGCGCTTGTTTTGTTGTTATTGGGTGTCGTAGCCAACGCTCACATCGGAGAGTTTGATGATTACTGGAAAAATCGAGCAGCGGAAGCCAAATTGGCGGCTCTTGACGCATACGATCCTAACCCGGAGGCCGTTACCGATAGTTTCAACGCTCAAGTTGGCAAAGCAATTGCGGGAGCAAACAGCACAAGAAGAAATCTGCGGACAAACAAGGGCCCATGCAGGGCGACGAACCCCATTGACAGGTGTTGGAGGTGCGATCCAAACTGGGCGAACAACCGGAAGAAGCTAGCCAGCTGCGTTCTGGGGTTCGGCCGGAAGACGTTCGGAGGAAAATACGGACCATATTACGTCGTCACAGACTCCTCCGACTCTGATCTACTCAACCCTAAACCAGGAACTCTCCGGCACGCCGTGATTCAGAAACAACCCCTCTGGATCATCTTCGCCAGAAGCATGGTCATTCGCCTGACCCAAGAGCTAATGGTGAACAGCCACAAAACCATTGACGCTCGAGGAGTCAACGTCCATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTATCGGCACCGGCGGACTTATCAGAGATTCCGTCGACCATTATGGGTTTAGAACGAAGAGTGATGGCGATGGAATTTCAATCTTTGGAGCTTCAAATGTTTGGATCGACCACATTTCCATGTCCAACTGCCAAGACGGACTAATCGACGCTATCATGGGGTCTACTGCTATCACCATCTCCAACTGTCACTTCACTCACCATAACGAGGTGATGCTGTTCGGAGCGAGCGACAGCTATTCCGGCGACGCAATAATGCAAGTGACGGTAGCTTTCAACCATTTCGGAAGAGGGTTAGTGCAGAGGATGCCGAGATGCAGATGGGGCTTCTTCCACGTCGTTAACAATGACTACACCCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGGAATCGCTTTATTGCTCCTCACAATGCAGCAGCTAAAGAGGTGACGAAGAGGGATTATGCACCAGAAGATGTGTGGAAAAACTGGATATGGAGATCAGAGGGAGATCTACTAGTGAATGGAGCATTCTTTGTGAGATCAGGAGATCAAAGTAGAAGGAGGCCATTTCACAGGCTGGATATGATCTCCTACAAGCCCGGGACTTTCGTCAGCCGGCTAACTCGCTTTTCCGGTGCCCTTGTTTGCTTCATCGGACGGCCATGTTAG 1302 50.69 MAEFGVKALVLLLLGVVANAHIGEFDDYWKNRAAEAKLAALDAYDPNPEAVTDSFNAQVGKAIAGANSTRRNLRTNKGPCRATNPIDRCWRCDPNWANNRKKLASCVLGFGRKTFGGKYGPYYVVTDSSDSDLLNPKPGTLRHAVIQKQPLWIIFARSMVIRLTQELMVNSHKTIDARGVNVHIAFGAGITVQFVKNVIIHGLHIHDIVIGTGGLIRDSVDHYGFRTKSDGDGISIFGASNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYSGDAIMQVTVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPEDVWKNWIWRSEGDLLVNGAFFVRSGDQSRRRPFHRLDMISYKPGTFVSRLTRFSGALVCFIGRPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39837804 39840287 - BLOR21918 Blo16g01131 72322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01131 433 PANTHER PECTATE LYASE 16 433 - -
Blo16g01131 433 SUPERFAMILY Pectin lyase-like 84 424 IPR011050 -
Blo16g01131 433 PANTHER PECTATE LYASE 18-RELATED 16 433 IPR045032 GO:0030570
Blo16g01131 433 Pfam Pectate lyase, N terminus 21 73 IPR007524 GO:0030570
Blo16g01131 433 Pfam Pectate lyase 168 349 IPR002022 -
Blo16g01131 433 SMART amb_all 158 355 IPR002022 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Blo16g01131 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Blo16g01131 433 Gene3D - 83 426 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01131 Blo-Chr16:39837804 Blo14g00306 Blo-Chr14:3136127 1.69E-166 dispersed
Blo17g00352 Blo-Chr17:3723371 Blo16g01131 Blo-Chr16:39837804 0 transposed
Blo01g00418 Blo-Chr1:4714030 Blo16g01131 Blo-Chr16:39837804 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01131 K01728 - csv:101206497 716.072