Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01135 ATGGGTCACGTTCGACCTGTTTTAACAATTGCGTCGATTTTGGGAAAATGGGTTACCTTCTGGGTTTTGTTTCTCGGACATTTTTATTCCTTTAACGTGTTGGCTGCCGAGAAAATCACTAAGAGAATGCTCATAACTCGTGACTGTTACCGCTCAATTTCAGCTTCCAAATCGATGGTAGACCAGGAAAATATGAATCCAAGTGAGAGTGAAGAAGGGTCATTTTTCCCGCCGGACGTGAAAGAAGAAAGCAACGGCGAAGATGACGATGGAGGTCTTCGTCAACCCGGAAAGAAAAGAAGATTGACAGTCCATCAAGTGAAGTATCTGGAGAAAAATTTTGAGGTAGAAAATAAGCTGGAACCGGAGAGAAAAGTGGGGCTGGCTAAAGAACTGGGTTTACAGCCGAGACAAGTTGCGATCTGGTTTCAGAACAGACGAGCCCGGTTGAAGACGAAGCTGCTGGAGAAAGACTATGGATCGTTAAAGCGTAGCTATGATAAACTCATGGCTGATTATGATAATCTGCTCAAGCAAAATGAAGATTTGAAAACAAAGATCAATGAAATGGAGGAAGAATTGCTCAAGAGGGAGAAGAGGACGAAGAAGATGGGTAGTTTAGAACAGCTTGAAGCCATGGCCGTCCAAGTTGCAGAGCTTGAAAACCCGTGCTCAAATTCAGACTCTAATCCGGTCTGCAACTTAGCAATGGCGATGAGAGGCAAACAAGGAGAGGCAAGCTCAGACAAGAGCGATACGTTCGATTCAGAGAGTCCATTCAACACAGAGAACCATTCCTCTTTAATGGAGGCTGCTAATAATTCAGCGCAGTCGGATTTCTCGCAAAACGAAGAAGATGACTCCACCAGAATCCCTTTTCCGCAGTTTTTCCCGAAGTTCGAAGAAGATGAAGAGTTTTCAAAGAGTTGTGTCTTTGGGTTTCCAGCTGACGAGCAGATGTTCTGTTTTTGGCCTTACTTCTCTTCAGAAATGTGA 996 44.08 MGHVRPVLTIASILGKWVTFWVLFLGHFYSFNVLAAEKITKRMLITRDCYRSISASKSMVDQENMNPSESEEGSFFPPDVKEESNGEDDDGGLRQPGKKRRLTVHQVKYLEKNFEVENKLEPERKVGLAKELGLQPRQVAIWFQNRRARLKTKLLEKDYGSLKRSYDKLMADYDNLLKQNEDLKTKINEMEEELLKREKRTKKMGSLEQLEAMAVQVAELENPCSNSDSNPVCNLAMAMRGKQGEASSDKSDTFDSESPFNTENHSSLMEAANNSAQSDFSQNEEDDSTRIPFPQFFPKFEEDEEFSKSCVFGFPADEQMFCFWPYFSSEM 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39868208 39869479 + BLOR21922 Blo16g01135 72326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01135 331 PRINTS Lambda-repressor HTH signature 133 149 IPR000047 GO:0003677
Blo16g01135 331 PRINTS Lambda-repressor HTH signature 124 133 IPR000047 GO:0003677
Blo16g01135 331 MobiDBLite consensus disorder prediction 244 264 - -
Blo16g01135 331 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Blo16g01135 331 Pfam Homeodomain 98 151 IPR001356 GO:0003677
Blo16g01135 331 SMART HOX_1 95 157 IPR001356 GO:0003677
Blo16g01135 331 SUPERFAMILY Homeodomain-like 85 152 IPR009057 -
Blo16g01135 331 MobiDBLite consensus disorder prediction 60 97 - -
Blo16g01135 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 324 IPR045224 GO:0003700
Blo16g01135 331 Coils Coil 166 200 - -
Blo16g01135 331 CDD homeodomain 96 153 IPR001356 GO:0003677
Blo16g01135 331 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Blo16g01135 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE 42 324 - -
Blo16g01135 331 Pfam Homeobox associated leucine zipper 153 194 IPR003106 GO:0006355|GO:0043565
Blo16g01135 331 Gene3D - 91 158 - -
Blo16g01135 331 MobiDBLite consensus disorder prediction 75 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01135 - - K09338 jre:108998850 261.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00465 Blo-Chr10:9674968 Blo16g01135 Blo-Chr16:39868208 5.55E-38 dispersed
Blo16g00197 Blo-Chr16:4403153 Blo16g01135 Blo-Chr16:39868208 6.61E-49 dispersed
Blo16g01125 Blo-Chr16:39769985 Blo16g01135 Blo-Chr16:39868208 3.86E-33 dispersed
Blo16g01135 Blo-Chr16:39868208 Blo04g00758 Blo-Chr4:7188204 8.91E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13474 PF00046 Homeodomain 2.90E-15 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01135 Blo_Chr16 FPKM 17.621773 17.338217 14.379822 14.285664 11.606682 11.151427 12.7302 17.030239 13.738855 15.671149