Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01142 ATGTCGATTTGTTCACTGCCAATCACTCCCAGTAACAACCGATCAACAGAAAATGGAAGAGGACTTGACCCACATACCAAAATCGACACCAGAAAACGTAACCCGTGGGAGATCGCCGATCCCGAGCCGTCGATAATCGCACCTGCGAAGGACGTTGTGGTAGAGATGAAGAGGTCCAGAGACGAAGTTCCTTTGGGTTCACAAAATAAGGGAAGCATTGCCTTCTCCCGGGGAGAAGGCTCTGGGCAACCACAAATGATGGGAGGAGGAAATACACACAAGCTAACAACGAATGATGCTCTGACATATCTTCAGGCAGTTAAGGAAATTTTTCAAGACAACAAGGAAAAATATGACGACTTCCTTGATGTCATGAAAGATTTTAAAGCCCAAAGAATCGATACGGCGGGTGTCATAGTGAGAGTAAAAGAATTATTCAAAGGTCATCCGGACCTAATTTTTGGCTTCAACACCTTCTTGCCCAAAGGATATGAGATTACTCTCCCGCTCAATGATGAGAATCGCACACAAAAGAAGCCTGTTGCTTTTGAAGAAGCTATCAATTTTGTAAATAAGATTAAGACACGTTTTAAAGGAGATGATCATGTTTACAAATCATTTTTAGACATTCTGAATATGTACAGAAAGGAAAGCAAGCTTATCAGCGAGGTCTACCGGGAGGTTTCTTTACTTCTCAATGGTCATGCTGACCTGTTAGCAGAGTTTTCTAATTTCTTACCTGATTCATCTGGGATGTCCTCCACTCAATGTGCTCCATCTAGTAGGAATTCAAATCTTCATGATAGGAATTCTGTCATACCTCCAATGCAACGAATGCATATTGACCAGGGTGACCTTGACCTCAGTGTTGACCATCCTAATTCTGACCGTGATAGAGCGGTTAGGAAAGGAGAGGAAGAACAACGTTGGCAAAGGGATAAGGACAAGGACGGTAGGGACATTAGAGATGAGAGAGAACAACAATGGGAACAGGATGATAAAGGTAACAAACATGATGGTACATATTTTCCCATGAGAGGATATTCCTTTTGTTATTTCTCTTCATTAGATTTACAACCTTTTATCCATTTTGCAAAATATGTCAACTGTTACTCGACCTTGTGTTTTACAAAGTGCAAGTCAGTTGCAGATATGGAAGGTGAAAAAACTGCCTTCTATGAAAAGGTGATGGACAAGTTACAAAACGAAGGTGATTGCCATAAATTTTCAAGGTGTCTAGTTATCTATTTCAAGAATATAATTACAAGACCAGAACTACTATCTTTGGTGAGTGATTTACTTGGAAGACATCCAGACCTCATGGATGAGTTTGATGAATTTCTAGCGTATTGTGAAAAGAATGGTAACACTTTGGAAACTCAGTTTTACTTGTTCCTGTGGAGTGAAGAGTATTTATCAAGATTGGTCAAGGTAGATACTGGAGAAAGAAATAGAGATAGAGATAGAGACGATGAAAATAGTAAAGAGATCGCCAATAACAAGTTGACTTTGTTCTCTGCCAAGGACAAGTATCTCTTGAAGCCTATCAGTGAACTTGATCTCTCAAACTGTGAGAGATGTACCCCTAGTTACCGACTGCTACCAAATAATTATCCTATACCTAATGCCAGCCAGAGAACAGAGCTTTGTGATCAAGTATTAAATGATCATTGGGTTTCTGTGACTTCTGGGAGCGAGGATTACTCTTTTAAACACATGCGTAAAAACCAATATGAAGAAAGTTTGTTTCGATGTGAAGATGACAGGTTCGAACTGGATATGTTGATAGAATCTGTCAATGCAACCACAAAGTGTGTTGAAGAATTATTAGAAAAGATGAACAACAACATAATCAAATCAGACAGTCCATTTCGAATAGAGGATCACTTAACAGCTTTGAACCTTAGGTGCATTGAACGCTTATATGGTGACCATGGGCTTGATGTGATAGACGTGCTAAGGAAGAGTGGACCTCTTGCTTTGCCTGTCATATTGATTCGCTTGAAACAAAAGCAAGAAGAGTGGGCACGGTGCCACCATGATTTTAATAAAGTTTGGGCAGATATTTATGCTAAGAATTATCATAAATCTCTTGATCATCGCAGCTTCTATTTCAAGCAACAGGATTCTAAAAGCTTGAGCACAAAAGCCTTGTTGACTGAAATCAAAGAAATTAATGAGAAGAAATGCAAAGAAGATAGCGTACTGCTTGCTATTGCTGCTGGAAATAGGCGACCTATAATTCCAAATTTGGAATTTGAGTATTTTGATCAGGAGATTCATGATGATCTATATCATCTCATCAAATATTCCTGTCAAGAACTTTTTACGGCTGATCTCCCTGATAAAATTATGAAGATTTGGACAATGTTCTTGGAACCCATGCTTGGTGTTCCTTCCCGACTTCAGAGTACTGAGTTAGCTGGAGAGGCCATCTTGCCAAGTAATCTTGGCCACAAAGGTGGTGCTGACATTGTTGGTGAGAGTGATGGAAGCCCTGGTGATGGTGTTACTGAATCCAAGAGGCTGAATTCTTTGAAAAAGGGGGTTAAAAGTATTATATTCGAACAATCCAGTTGTGGCAGGACTAGATCTGAAAATTTTGATAGTGGGGTAAATGAAAATTTTGATAGTGCAGTGGAGCGAAGGAATGGACAAACTAACATTGAAAAAATATCAGGTGTGTTGATTCATTTTAAAATGATGAAACTTTGTTCGACCACTATTGTTTCTAGAGAATGTGATGGCGCTGTCGATATTGAACGGAAGTTGCCTATACCAGAGGGGATTGATTCTGTACGACTGGCAATAGTTTCAACTGCTGTCAACACAGAAGGTATAGAAGTTCGAACAAATGATGAAGGGGTTACCAAAAATGTCAATATAGAAAGAGAGGAAGGTGAATTATCTCCGACTGGTGATTTTGATGATAATTTTGTGAATTACGGAGAAGCTGGTGTAGAATTTTTCAATAAGTCCAAGGATTCTTCAGTAGGCAGGCAAAATTTAATCACACATGTGGAGGAAAAACTATGTCAAAGGGAGGTAAGAGGAGATAATGGTATAACTGCTGATTATGACGGTGAGGAAAGCGCTCACAGGTCATTGCAAGACAGTGAAAATGCTTTTGAAAATGGTGATGTTTCTGGAAGTGAGTCTGGTAATGGTGAGCATGAAGATCACGAGGTAGATCGAGATCATGATGAGCGTGGTGATAAGGCTGAGAGTGAAGGTGAGGTTGAGGTGATAGATGATGCCCAAGATGTTGAAGGAGATGAAACATCTATACCATCTGCCGAAAATTTTTTGCACTCTTCAAAGCCTCTTGTTAAACATGTTCTCCCTGCATTGCACAACAAAGAGAAGAATTCACGGGTTTTTTATGGGAATGACTCGTTGTACGTGCTTTTGAGGCTTCACCAAACATTGTATGAGAGAATACAATCAGCAAAGACTAATTCCCTATCTGCTGAGAGGAAGTGGCGGGTGTCAAACGATAAAAATCCAGCTAATCTCTATACCAGGTTCATGAATGCACTTTACAGTTTACTTGGTGGCTCTTTTGATAATACCAAATTTGAGGACGATTGTCGAGCTCTTATTGGAACTCAGTCATACATTTTATTTACATTGGACAAGTTGTTGTATAAATTTGTTAAACATCTTCAAGTGATTGCCACCGATGAGATGGATAACAAGCTTCTCCAGCTATATGAATATGAAAAATCAAGAAAGGCTGGAAGATTTGCAGATGCTGTTTATTATGAAAATGCCCGTGTTCTTCTTCATGATGATAACATATATCGCATAGAATGTTCATCCAATCCAACACATGTGTCCATTCAGCTCATGGATTACGGTCAGGATAAACCTGAAATGACTGCTATTTCCATGGACCCTAATTTTTCAATCTATCTTTACAATGAATTCCTGTCAACGCCTCCTCCCGAGGAGAATCCTGAGATTTTCTTAAAGAGAAATAAACGGAAAAATGTGTTTGACGATGAAAGCTCTGCTGCAAATGAGGTTGAAATTGTTAATGGTCTTGAGTGTCTCCTACGTATTAGATACAGAAGACTTTTTGTATCGCAGGAGGAGAAAACATGGTGCAAGTAG 4116 39.41 MSICSLPITPSNNRSTENGRGLDPHTKIDTRKRNPWEIADPEPSIIAPAKDVVVEMKRSRDEVPLGSQNKGSIAFSRGEGSGQPQMMGGGNTHKLTTNDALTYLQAVKEIFQDNKEKYDDFLDVMKDFKAQRIDTAGVIVRVKELFKGHPDLIFGFNTFLPKGYEITLPLNDENRTQKKPVAFEEAINFVNKIKTRFKGDDHVYKSFLDILNMYRKESKLISEVYREVSLLLNGHADLLAEFSNFLPDSSGMSSTQCAPSSRNSNLHDRNSVIPPMQRMHIDQGDLDLSVDHPNSDRDRAVRKGEEEQRWQRDKDKDGRDIRDEREQQWEQDDKGNKHDGTYFPMRGYSFCYFSSLDLQPFIHFAKYVNCYSTLCFTKCKSVADMEGEKTAFYEKVMDKLQNEGDCHKFSRCLVIYFKNIITRPELLSLVSDLLGRHPDLMDEFDEFLAYCEKNGNTLETQFYLFLWSEEYLSRLVKVDTGERNRDRDRDDENSKEIANNKLTLFSAKDKYLLKPISELDLSNCERCTPSYRLLPNNYPIPNASQRTELCDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLIESVNATTKCVEELLEKMNNNIIKSDSPFRIEDHLTALNLRCIERLYGDHGLDVIDVLRKSGPLALPVILIRLKQKQEEWARCHHDFNKVWADIYAKNYHKSLDHRSFYFKQQDSKSLSTKALLTEIKEINEKKCKEDSVLLAIAAGNRRPIIPNLEFEYFDQEIHDDLYHLIKYSCQELFTADLPDKIMKIWTMFLEPMLGVPSRLQSTELAGEAILPSNLGHKGGADIVGESDGSPGDGVTESKRLNSLKKGVKSIIFEQSSCGRTRSENFDSGVNENFDSAVERRNGQTNIEKISGVLIHFKMMKLCSTTIVSRECDGAVDIERKLPIPEGIDSVRLAIVSTAVNTEGIEVRTNDEGVTKNVNIEREEGELSPTGDFDDNFVNYGEAGVEFFNKSKDSSVGRQNLITHVEEKLCQREVRGDNGITADYDGEESAHRSLQDSENAFENGDVSGSESGNGEHEDHEVDRDHDERGDKAESEGEVEVIDDAQDVEGDETSIPSAENFLHSSKPLVKHVLPALHNKEKNSRVFYGNDSLYVLLRLHQTLYERIQSAKTNSLSAERKWRVSNDKNPANLYTRFMNALYSLLGGSFDNTKFEDDCRALIGTQSYILFTLDKLLYKFVKHLQVIATDEMDNKLLQLYEYEKSRKAGRFADAVYYENARVLLHDDNIYRIECSSNPTHVSIQLMDYGQDKPEMTAISMDPNFSIYLYNEFLSTPPPEENPEIFLKRNKRKNVFDDESSAANEVEIVNGLECLLRIRYRRLFVSQEEKTWCK 1371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39937331 39951168 + BLOR21929 Blo16g01142 72333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01142 1371 MobiDBLite consensus disorder prediction 286 337 - -
Blo16g01142 1371 MobiDBLite consensus disorder prediction 1038 1052 - -
Blo16g01142 1371 Pfam Paired amphipathic helix repeat 202 246 IPR003822 GO:0006355
Blo16g01142 1371 Pfam Paired amphipathic helix repeat 408 448 IPR003822 GO:0006355
Blo16g01142 1371 Pfam Paired amphipathic helix repeat 116 160 IPR003822 GO:0006355
Blo16g01142 1371 MobiDBLite consensus disorder prediction 1021 1037 - -
Blo16g01142 1371 ProSiteProfiles PAH domain profile. 381 451 IPR003822 GO:0006355
Blo16g01142 1371 MobiDBLite consensus disorder prediction 58 93 - -
Blo16g01142 1371 PANTHER SIN3B-RELATED 65 1353 IPR039774 GO:0003714
Blo16g01142 1371 Gene3D Paired amphipathic helix 177 250 IPR036600 GO:0006355
Blo16g01142 1371 SUPERFAMILY PAH2 domain 389 452 IPR036600 GO:0006355
Blo16g01142 1371 Pfam C-terminal domain of Sin3a protein 1127 1364 IPR031693 -
Blo16g01142 1371 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 65 1353 - -
Blo16g01142 1371 SUPERFAMILY PAH2 domain 177 248 IPR036600 GO:0006355
Blo16g01142 1371 ProSiteProfiles PAH domain profile. 179 249 IPR003822 GO:0006355
Blo16g01142 1371 SUPERFAMILY PAH2 domain 91 162 IPR036600 GO:0006355
Blo16g01142 1371 SMART hdac_interact2seq4b 523 623 IPR013194 -
Blo16g01142 1371 Gene3D Paired amphipathic helix 99 161 IPR036600 GO:0006355
Blo16g01142 1371 MobiDBLite consensus disorder prediction 250 271 - -
Blo16g01142 1371 MobiDBLite consensus disorder prediction 20 34 - -
Blo16g01142 1371 MobiDBLite consensus disorder prediction 1 19 - -
Blo16g01142 1371 Gene3D Paired amphipathic helix 384 453 IPR036600 GO:0006355
Blo16g01142 1371 ProSiteProfiles PAH domain profile. 93 163 IPR003822 GO:0006355
Blo16g01142 1371 MobiDBLite consensus disorder prediction 1021 1094 - -
Blo16g01142 1371 MobiDBLite consensus disorder prediction 65 93 - -
Blo16g01142 1371 MobiDBLite consensus disorder prediction 1053 1077 - -
Blo16g01142 1371 MobiDBLite consensus disorder prediction 1 34 - -
Blo16g01142 1371 Pfam Sin3 family co-repressor 525 616 IPR013194 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01142 K11644 SIN3A; paired amphipathic helix protein Sin3a - mnt:21394293 1516.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00889 Blo-Chr11:17482605 Blo16g01142 Blo-Chr16:39937331 0 dispersed
Blo01g00408 Blo-Chr1:4618567 Blo16g01142 Blo-Chr16:39937331 3.12E-14 wgd
Blo16g01142 Blo-Chr16:39937331 Blo06g00858 Blo-Chr6:31821239 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021234 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13475 PF16879 Sin3a_C 5.70E-50 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01142 Blo_Chr16 FPKM 22.651461 25.924784 59.075115 57.117535 34.228802 36.071434 33.293068 649.877136 735.736389 666.568176