Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01143 ATGAATGCTCTCTCCATGCTCGCACCTCTGCCTATTATTGAGCCGTGTTCTTCAGCCTCATCTATCGTCCTATCTCCTTCACGTTTTCATTCCTGCTCTCTCACTCGAGTCCTAGGGTTTTGTTGCCCGAAATCTCTTGCTACATCCTCCCCACTCCGACTTCGATTTCGCGTCGCTTTCGATTATCAGAGTTCTGCTTTCCCCGCCGAGCATCGACTTTCTGATGCGGATGAAGATGACGACGAGGATGATGATGTGGCTGCCGAGGAATATGACGACATTTCCGGGGATGTATCGGACGGAATCGAACCGAGTGATGAGGAAATCGATTTGCCAATGGCAGCTGCGGGGGCGTCGAATCGGTTCGAGGAATTTAAGTGGCAGAGAGTGGGAAGGATCCTGAGAGAAGTCAGAACATTTGGTGAAGAAATCATTGATGCAGATGAACTCGCTTCTATTTATGATTTCCGCATTGATAAATTTCAGCGGTTGGCCATTCAAGCATTCTTAGAAGGATCTTCTGTGGTTGTATCAGCGCCAACAAGCAGCGGCAAGACTTTGATTGCAGAAGCTGCGGCTGTAGCCACGGTAGCCAGGAAACGCCGATTATTTTACACGACTCCACTTAAAGCCTTGTCAAATCAGAAATTTCGTGAATTTCGTGAAACGTTTGGAGATACCAATGTTGGGCTTCTTACAGGAGACTCTGCAATTAACAAGGACGCTCAGATTCTGATCATGACCACAGAAATCTTGCGTAACATGTTGTATCAGAGTGTAGGGATGGCATCTTCTGGGAGTGGATTATTCCATGTTGATGCGATTGTTTTAGATGAAGTTCATTATCTTAGTGATATTTCACGGGGTACGGTGTGGGAAGAGATTGTTATTTATTGTCCCAAAGAAGTTCAACTTATATGTCTTTCAGCAACAGTAGCAAATCCAGATGAACTAGCTGGTTGGATAGGACAGATTCATGGCAAGACTGAGTTGGTAACATCGTCAAAGCGTCCAGTTCCTCTATCATGGCATTTTTCTACAAGGACTTCTTTGTTACCTCTTCTTGATGAGAAGGGAACGCGAATGAATAGGAAGCTGTCGCTCAACTATCTTCAACTCCATGCGTCAGGAGTTAAGTCCTACAAAGAAGATGGCTATAAAAGAAGGAATTCAAGAAAACGTGAAAGTCAGATGAGCTACGATGATATTAGTAGCATAACTGGACAACATTCTCTTTCCAAACAAGACATAAACTCTATTCGTCGATCACAAATTCCTCTGGTCACAGACACACTATGGCAACTTAAGGGCGGGGATATGCTTCCCGCAATTTGGTTCATATTTAGCAGGAAAGGTTGTGATGCAGCCGTTCAATATCTGGAAGGTAGTAAACTCTTAGATGAATGTGAGACAAGTGAGGTTGAATTGGCCTTGAAGAAATTCCAAATGCAGTATCCTGATGCTGTCAGGGAGACAGCTATCAAAGGTCTTCTTCAAGGGGTTGCTGCACATCATGCTGGCTGTTTGCCACTATGGAAGTCATTCATAGAAGAACTCTTTCAACGAGGACTTGTTAAGGTTGTCTTTGCGACTGAAACACTAGCTGCAGGAATTAACATGCCTGCTAGGACGGCAGTTATTTCATCCATAAGCAAAAGAAGTAATGCAGGTCGTATCCAATTGAGTTCAAACGAACTACTTCAAATGGCAGGGCGTGCCGGACGTAGAGGTATTGATGGAAGAGGTCATGTGGTGCTTGTTCAAACTCCTTCTGAAGGGGCTGAAGAAAGCTGCAAACTTTTATTTGCTGGTATGGAACCACTTGTTTCACAGTTTACTGCATCCTACGGAATGGTGCTGAATCTCCTTGCAGGAGCAAAAGTTACGCGTAGATTAAATGACGCAAATGATAAGAAAGCCTTCCTTGCTGGACGAACTTTAGAAGAAGCTAGGAAGTTGGTGGAGCAAAGTTTTGGAAATTATGTTGGGAGCAACGTCATGCTTGCTGCAAAAGAAGAACTAACTAAAATAAAGAAAGAGATTGAAATATTAACCTCAGAAATAACAGATGAAGCCATAGATAGAAAGAGCAGGAAGCTTATGTCAGTAGAATCATACAAGGAGATTGCAGAATTACAAGATGAATTAAGGTCACAGAAACAACTCAGGACAGAACTGCGAAGAAAGATGGAAACACACAGAATCTCTGCTCTGAGATCTCTACTAAAGGACTGCGAAAATGGACAACTACCCTTTATTTGCTTGCAATACAAAGATTCTGAAGGGGTTGAACACTCAGTTCCTTCTGTGTTCCTGGGAAACGTGGGCTCATCAGAACTTAGAAATATAGTTGCTACAAATGAATCATTGTCAGTCAATATGATCGAAGAGGAGCATATTGACGAAGATCATGCAATAGACGAGAATGTAGGCGTCAAGCCATCATATTATGTGGCTTTAGGTTCAGATAATGCTTGGTACCTATTCTCTGAGAATTGGATTAGAACTGTTTACAAAACCGGCTTTCCAAATGTCCCTCTAGCGAAAGGGGATGCAATGCCTCGGGAAATTATGAGGAGGCTTCTTGATAAGGAGGAAAAAAAGTGGGAAAATCTTGCCGAGTCCATACGGGGTAGTTTATGGTGCATGGAAGGATCTCTAGAGACATGGTCTTGGAGTTTAAACGTACCAGTTTTGAATAGTCTTTCGGAAAATGATGAATTATTACAAGAATCTCCAGCATATCTCGAAGCATTAAACTGTTACAAGGAACAAAGAACTAAAGTTGCTCGTTTGAAGAAAAGAATAGCTCGGACAGAAGGCTTTAAAGAATATAAGAAGGTTATTGACATGACCAGGACGATCGAGGATAAGATACGACAACTGAAGGCTAGATCGAGTCGGCTGAGTAACCGGATAGAGCAAATTGAACCGTCTGGCTGGAAGGAGTTTTTGCATATTGGTAATGTGATACATGAAATGCGGGCACTTGACATTAATACTCATGTGATATTTCCGCTTGGAGAAACAGCAGCAGCCATTCGAGGAGAAAATGAGCTCTGGCTGGCAATGGTTCTAAGAAGTAAACTTCTGTTAGATCTAAAACCTGCACAACTCGCTGGTTTTGTTGCAAGTTTAGTTTCTGAAGGGATCAAACTACGCCCCTGGAAGAACAATAATTACATATTTGAACCTTCAACGGTGGTGATCAAGGTCATAAACATCTTGGAAAATCAAAGAAGCAGTCTCATGCGTCTTCAAGAGAAGCATGGAATTAGCATACCAATCTGCTTGGATTGTCAATTCTCAGGTATGGTTGAGGCCTGGGCTTCTGGGTTAACTTGGAGGGAAATGATGATGGATTGTGCTATGGACGAGGGGGATCTAGCCCGTCTTTTGCGTAGGACGATAGACCTGCTTGCTCAGATTCCGAAATTGCCCGATATTGACCCATTACTTCAAAGCAATGCATCAACCGCTTCAAATGTCATGGACCGGTCGCCGATAAGCGAACTCGCTGGATGA 3525 43.06 MNALSMLAPLPIIEPCSSASSIVLSPSRFHSCSLTRVLGFCCPKSLATSSPLRLRFRVAFDYQSSAFPAEHRLSDADEDDDEDDDVAAEEYDDISGDVSDGIEPSDEEIDLPMAAAGASNRFEEFKWQRVGRILREVRTFGEEIIDADELASIYDFRIDKFQRLAIQAFLEGSSVVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRETFGDTNVGLLTGDSAINKDAQILIMTTEILRNMLYQSVGMASSGSGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLSWHFSTRTSLLPLLDEKGTRMNRKLSLNYLQLHASGVKSYKEDGYKRRNSRKRESQMSYDDISSITGQHSLSKQDINSIRRSQIPLVTDTLWQLKGGDMLPAIWFIFSRKGCDAAVQYLEGSKLLDECETSEVELALKKFQMQYPDAVRETAIKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSISKRSNAGRIQLSSNELLQMAGRAGRRGIDGRGHVVLVQTPSEGAEESCKLLFAGMEPLVSQFTASYGMVLNLLAGAKVTRRLNDANDKKAFLAGRTLEEARKLVEQSFGNYVGSNVMLAAKEELTKIKKEIEILTSEITDEAIDRKSRKLMSVESYKEIAELQDELRSQKQLRTELRRKMETHRISALRSLLKDCENGQLPFICLQYKDSEGVEHSVPSVFLGNVGSSELRNIVATNESLSVNMIEEEHIDEDHAIDENVGVKPSYYVALGSDNAWYLFSENWIRTVYKTGFPNVPLAKGDAMPREIMRRLLDKEEKKWENLAESIRGSLWCMEGSLETWSWSLNVPVLNSLSENDELLQESPAYLEALNCYKEQRTKVARLKKRIARTEGFKEYKKVIDMTRTIEDKIRQLKARSSRLSNRIEQIEPSGWKEFLHIGNVIHEMRALDINTHVIFPLGETAAAIRGENELWLAMVLRSKLLLDLKPAQLAGFVASLVSEGIKLRPWKNNNYIFEPSTVVIKVINILENQRSSLMRLQEKHGISIPICLDCQFSGMVEAWASGLTWREMMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPLLQSNASTASNVMDRSPISELAG 1174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39953800 39959018 - BLOR21930 Blo16g01143 72334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01143 1174 Coils Coil 709 729 - -
Blo16g01143 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 590 IPR027417 -
Blo16g01143 1174 Pfam DSHCT (NUC185) domain 1003 1169 IPR012961 -
Blo16g01143 1174 Gene3D - 119 337 IPR027417 -
Blo16g01143 1174 Gene3D - 945 1166 - -
Blo16g01143 1174 CDD SF2_C_Ski2 403 589 - -
Blo16g01143 1174 SMART ultradead3 154 344 IPR014001 -
Blo16g01143 1174 SMART helicmild6 491 577 IPR001650 -
Blo16g01143 1174 Coils Coil 667 687 - -
Blo16g01143 1174 MobiDBLite consensus disorder prediction 71 90 - -
Blo16g01143 1174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 330 IPR014001 -
Blo16g01143 1174 MobiDBLite consensus disorder prediction 75 90 - -
Blo16g01143 1174 Pfam DEAD/DEAH box helicase 161 313 IPR011545 GO:0003676|GO:0005524
Blo16g01143 1174 Gene3D - 338 608 IPR027417 -
Blo16g01143 1174 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 35 1170 - -
Blo16g01143 1174 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 427 623 IPR001650 -
Blo16g01143 1174 SMART DSHCT_2 999 1173 IPR012961 -
Blo16g01143 1174 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 35 1170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01143 K26077 ISE2, EMB25; ATP-dependent RNA helicase ISE2 [EC:3.6.4.13] - vvi:100253458 1685.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00817 Blo-Chr16:34317019 Blo16g01143 Blo-Chr16:39953800 3.40E-73 dispersed
Blo16g01143 Blo-Chr16:39953800 Blo18g00068 Blo-Chr18:495677 4.48E-16 dispersed
Blo16g01143 Blo-Chr16:39953800 Blo12g00064 Blo-Chr12:4463753 8.23E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01143 Blo_Chr16 FPKM 0.949958 0.0 0.0 0.0 0.0 0.0 0.0 3.116788 2.680419 2.610513