Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01144 ATGGCGGCGTGGAGACCCCGTTTTCTATTTCTGCAAATTCTCCTCATCTTGTCTCTTCTCACCATTTCAACCCGATCCGACCCGGACGCGCTCCAGGATTACTGCGTAGCAGACCAGGGTCCTTCGACCTTCTTCATCAATGGAATCCCTTGTTTAAACCCAGCTTTAGCGGCTTCTTCCCATTTCACCAGCTCTGCGTTATCCAAACCAGGAAATACACAGACAAATATCTTCGGCTTCAACGTTACCCTGGCCAATCATGCAAACCTACCCGGCCTCAACACGCAGGGTTTGACGATGGCTCGAACGGACCTAGCCGGGCTCGGGGTGGTGCCTCTCCACTCCCACCCACGAGCCTCGGAAGTGACCATCTGCATAAAGGGAGAGCTTTCCGTGGGCTTCATCGACACGTCGAACCGGCTGTTCACGCAGCGGCTGAGGGTCGGAGAGTCATTCGTGTTTCCCAAAGATTTGATTCATTTTCTGTACAACGAAAGCCCCAAAACCCCGGCTGCCGCCGTGTCGGGTTTCAACAGCCAGAGCCCCGGCGTTCAGCTGCTTTCGCTCGCTGCTTTCACGTCCAGGCCCATGATCCCCGACGAGGTTTTGAAGAAGGCGTTTCAGATTAATGGACAAGATCTCTCTCGGATCCGTAACAATCTGGGAGGCTGA 672 54.32 MAAWRPRFLFLQILLILSLLTISTRSDPDALQDYCVADQGPSTFFINGIPCLNPALAASSHFTSSALSKPGNTQTNIFGFNVTLANHANLPGLNTQGLTMARTDLAGLGVVPLHSHPRASEVTICIKGELSVGFIDTSNRLFTQRLRVGESFVFPKDLIHFLYNESPKTPAAAVSGFNSQSPGVQLLSLAAFTSRPMIPDEVLKKAFQINGQDLSRIRNNLGG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 39960914 39961585 - BLOR21931 Blo16g01144 72335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01144 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 222 - -
Blo16g01144 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 12 222 - -
Blo16g01144 223 CDD cupin_OxOx 27 221 - -
Blo16g01144 223 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Blo16g01144 223 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Blo16g01144 223 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Blo16g01144 223 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Blo16g01144 223 Gene3D Jelly Rolls 26 223 IPR014710 -
Blo16g01144 223 SUPERFAMILY RmlC-like cupins 27 220 IPR011051 -
Blo16g01144 223 Pfam Cupin 67 212 IPR006045 -
Blo16g01144 223 SMART Cupin_1_3 65 215 IPR006045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01144 - - - zju:107428765 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01144 Blo-Chr16:39960914 Blo18g00681 Blo-Chr18:13765073 1.54E-46 dispersed
Blo13g00033 Blo-Chr13:525973 Blo16g01144 Blo-Chr16:39960914 2.43E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g797 . Blo16g01144 . . Bpe13g01443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012955 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01144 Blo_Chr16 FPKM 16.505037 17.822515 9.258798 9.304901 17.046217 15.733346 16.047949 10.522243 10.083823 8.948536