Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01152 ATGTTATTATGCACCCGAATCAAAGGCGCTCTTTCTCTCCATTGTCTCCGTTACTCAGCCTCAGCCTCAGCCTCCGCCTTCATTTCTACGCTGCCGCCGTCTAGACCATCTCTCCGCTATATCTGCTCTTCTTTTTCGTCCTCAGAGGTTACCATGGTGGCGGAGCATTTAAAAGATGAGGACTACCTCAAAATTATAATTCCCAAGCGCATCCAGCTCTTTGAGTCCATCAAAGCTCAGCAGCTAGCTCATCGTCAATCTCTCCCGTCGGATCCCATCAAGATTACCTTGCCGGACGGAACGGTGAAGGAAGGCAAGAAGTGGCAAACAACTCCCTTTGACATTGCGAAGGAGCTTTCAAAAAGTTTGGCTACAAACGCTTTGATTTCTCAAGTGGACGGAGTTTTATGGGACATGAGTAGACCGCTAGAGAGTGACTGCGAGATTAAGATTTTCACTTTTAGTAGCGATGAAGGGCGTGACACGTTTTGGCATTCTAGTGCTCATATACTCGGACAGTCACTAGAGATGGAATACGGTTGCAAGCTTTGCATTGGACCTTGTACCACTAGAGGAGAGGGCTTCTATTATGATGGATTTTATGGTGATCTAGGCTTGAACGAAGACCACTTCAAAAAAATTGAAGCGGGGGCACTAAAGGCTGTTGCGGAGAAACAGCCGTTCGAGCGTATTGAAGTGTCAAGGCAACAGGCGCTTGAGATATTTTCTGACAATACTTTCAAAGTTGAAATTATCAAAGATTTGCCTGAAGACAAGACTATCACAGTATATAGATGTGGCCCTCTAGTTGATTTATGTCGTGGCCCCCACATTCCAAATACATCCTTTGTGAAGGCAATTGCGTGTCTGAAGGCTTCATCAGCCTATTGGAGGGGGAACAAAGATCGTGAAAGCTTACAAAGGGTTTATGGTATCTCTTATCCCGATCAAAAAAGTTTGAAGGAATATATAAATTTGCTGGAAGAAGCCAAGAAGTATGACCATCGATTGTTGGGTACAAAACAAGATCTTTTCTTTTGCCATCCACTTAGTCCAGGAAGTTGGTTCTTCCTCCCTCATGGAGCCCGAATCTACAACAAACTAATGGATTTTATGCGGACACAATATAGGGAGAGAGGTTATGAAGAGGTTTTATCACCAAATATGTACAATATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTGTTTGAGATTGAAAAACAAGAATTTGGATTGAAACCAATGAATTGTCCTGGGCACTGTTTGATGTTCCAACACAGAGTTCGCTCATATAGGGAACTTCCTCTTCGATTGGCTGATTTTGGAGTTTTGCACCGTAATGAGGCCAGTGGTGCTCTGACTGGGCTTACTCGTGTGAGGAGGTTTCAACAGGATGATGCTCATATCTTCTGCTCAAAGTCTCAGATAAAAGATGAAGTGAGGGGCGTCTTAGAATTCATCAAATATATCTACAACATTTTTGGGTTCACCTTTGATCTGAAGCTGTCAACGAGGCCTGAAAAATACCTTGGAGACATAGCTACATGGGAGGAAGCTGAAGCAGCTCTTACAGAAGCATTAAATGAATTTGGTAAACCCTGGCAGCTAAATGAAGGTGATGGTGCATTTTATGGGCCAAAGATAGACATTAGTGTTTCTGACGCATTGAAGAGGAAATTTCAATGTGCGACACTACAGTTGGACTTCCAACTTCCCAAGCGTTTTGAATTGTATTACTCCACAGAGGATGAAGCCAAGAGAGAGATGCCTGTGATGATACATAGAGCCATTTTGGGGTCTGTTGAGCGGATGTTTGCTATTCTGTTGGAGCATTATAAGGGGAAATGGCCTTTCTGGCTTAGTCCACGTCAAGCCATTGTTTGCCCCGTGTCGGAGAAATCCCAATCTTACGCGCTTAAGGTGCGCGATCAAATTCATCATGCTGGTTATTACGTCGATGCTGATACAACTGATCGGAAGATCCAAAAAAAGGTGCGAGAAGCCCAGTTGGCGCAGTACAACTTTATCTTGGTTGTGGGTGAGGAGGAGGCCAACACTGGACAGGTGAGTGTTCGCGTCAGAGATAAAGCCGATCACAGAGCGATGAGCATCGAGGACTTGCTCAAACACTTCGAGGAAGAGAATGCAGCTTTTCATTAG 2184 44.14 MLLCTRIKGALSLHCLRYSASASASAFISTLPPSRPSLRYICSSFSSSEVTMVAEHLKDEDYLKIIIPKRIQLFESIKAQQLAHRQSLPSDPIKITLPDGTVKEGKKWQTTPFDIAKELSKSLATNALISQVDGVLWDMSRPLESDCEIKIFTFSSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDGFYGDLGLNEDHFKKIEAGALKAVAEKQPFERIEVSRQQALEIFSDNTFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRESLQRVYGISYPDQKSLKEYINLLEEAKKYDHRLLGTKQDLFFCHPLSPGSWFFLPHGARIYNKLMDFMRTQYRERGYEEVLSPNMYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCSKSQIKDEVRGVLEFIKYIYNIFGFTFDLKLSTRPEKYLGDIATWEEAEAALTEALNEFGKPWQLNEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPKRFELYYSTEDEAKREMPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALKVRDQIHHAGYYVDADTTDRKIQKKVREAQLAQYNFILVVGEEEANTGQVSVRVRDKADHRAMSIEDLLKHFEEENAAFH 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40045815 40051522 - BLOR21939 Blo16g01152 72343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01152 727 Hamap Threonine--tRNA ligase [thrS]. 158 725 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 Gene3D - 624 727 IPR036621 -
Blo16g01152 727 Pfam TGS domain 93 153 IPR004095 -
Blo16g01152 727 SUPERFAMILY TGS-like 93 154 IPR012676 -
Blo16g01152 727 SMART tRNA_SAD_4 261 310 IPR012947 GO:0004812|GO:0005524|GO:0043039
Blo16g01152 727 Gene3D - 156 314 - -
Blo16g01152 727 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 322 625 IPR006195 -
Blo16g01152 727 SUPERFAMILY Class II aaRS ABD-related 618 722 - -
Blo16g01152 727 CDD ThrRS_core 334 630 IPR033728 -
Blo16g01152 727 CDD ThrRS_anticodon 630 720 - -
Blo16g01152 727 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 411 620 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo16g01152 727 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 55 726 - -
Blo16g01152 727 PANTHER THREONINE-TRNA LIGASE 55 726 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 PRINTS Threonyl-tRNA synthetase signature 625 637 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 PRINTS Threonyl-tRNA synthetase signature 598 611 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 PRINTS Threonyl-tRNA synthetase signature 420 448 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 PRINTS Threonyl-tRNA synthetase signature 453 476 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 PRINTS Threonyl-tRNA synthetase signature 554 582 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 SUPERFAMILY Class II aaRS and biotin synthetases 334 617 IPR045864 -
Blo16g01152 727 Pfam Anticodon binding domain 632 721 IPR004154 -
Blo16g01152 727 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 261 310 IPR012947 GO:0004812|GO:0005524|GO:0043039
Blo16g01152 727 Gene3D - 91 152 IPR012675 -
Blo16g01152 727 CDD TGS_ThrRS 93 158 - -
Blo16g01152 727 Gene3D Bira Bifunctional Protein; Domain 2 316 623 IPR045864 -
Blo16g01152 727 TIGRFAM thrS: threonine--tRNA ligase 164 721 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo16g01152 727 SUPERFAMILY ThrRS/AlaRS common domain 155 332 IPR018163 GO:0000166
Blo16g01152 727 ProSiteProfiles TGS domain profile. 91 153 IPR004095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01152 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 1250.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00402 Blo16g01152 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00426 Blo-Chr13:24469218 Blo16g01152 Blo-Chr16:40045815 8.07E-121 dispersed
Blo01g00402 Blo-Chr1:4535835 Blo16g01152 Blo-Chr16:40045815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01152 Blo_Chr16 FPKM 4.691176 5.067264 7.649955 6.547837 8.237357 8.760843 8.931633 5.042318 5.045959 5.137266