Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01162 ATGGGTAGGGCGGCTGCTGCCGTGGTGGTGGTCAGTAGGAGGCCCCGCCCATTTACCAAAACCTGGAAGAGGACGTGCACTGCCGGATTGTGGGTCCACGTCACCGGCGACCTTCCTGATTTGTTTGGCGGGATACCAACGCTTCTGCAGACATCTCATTCTATAATTATATATCTGCACTTCGACGACGAAGCAGCCGTACACTGTGCGGGTTCATCAGGTCATACTTGGAAGCCTGCCATGACTGTTGAAACAAACACTCCAAGTTATTGGTTGAACTGGAGGTTCTTCTTATGTGCAGTCTTTGTCTTGATTTCTATGGTTTTAGCAGCATTCTTAATATGGAAATACGAAGGTTTCAACAAATCAAAGCCAGAGAGGAGAGAGAATCAGCGAAATCAGCAAGAATCGGTCGGTTCTCTCTACGAAGATGAAGCATGGGGGACATGCCTCAAAGGAATCCATCCTGCTTGGGTGCTTGCCTACAGATTGATCGCGTTTATAACACTTTTGACATTGCTTACGATCAATGTGGCTTTGGATAGTTTTGGCATCTTTTTCTTCTATACCCAGTGGACATTTGCTTTGGTTACATTCTATTTTGGGTTCGGTTTCTCGTACTCGGTTTATGGATGCTGGAAAAGAAAACACAGAGCTGATGGGAGCTTAAATGCAGAACAAGGTAATTATGTGGCTCCAACCCCAGGCCGGAGTTTGGAAGTATCTTATGCATCAAAGAGGTCGACCTACGATGATGATTCAAATGATCGTCAAGGCGCAGGTGTATGTGGATACCTATTTCAAATCGTTTTTCAGATAACTGCAGGTGCAGTGGTACTCACTGATAGCGTCTTCTGGCTAGTTCTTTATCCATTCCTAACTTCGAGAGCTCTCAACTTTTTGCTCGTTTGTATGCATTCTATCAATGCTACTTTCCTCCTTGGCGAGACGGCTTTGAATTCCTTGGTACGCTCTTGTGCAGTTCCTTTTTTTTTTCCCTTTTTTTTAGTTGATATATTTGTATTTTCTGCTGGACAGCGATTTCCGATGTTTCGAATTGGATATTTTCTGCTGTGGACGTCCATATTCGTCGTTTTCCAATGGATTATTCATGTTTGTGTCTCACTGCGGTGGCCTTATCCATTCCTTGACTTATCATCCCCTTATGCACCTTTATGGTATCTCGGGGTGGGGGTGATGCACATTCCATGCTATGGCATCTTTGCATTAATAATAAGAATGAAGCGCTCGCTCTTGTCGAGAACTCGTTGCCAGTCCTGTCTCCGGTGA 1290 44.88 MGRAAAAVVVVSRRPRPFTKTWKRTCTAGLWVHVTGDLPDLFGGIPTLLQTSHSIIIYLHFDDEAAVHCAGSSGHTWKPAMTVETNTPSYWLNWRFFLCAVFVLISMVLAAFLIWKYEGFNKSKPERRENQRNQQESVGSLYEDEAWGTCLKGIHPAWVLAYRLIAFITLLTLLTINVALDSFGIFFFYTQWTFALVTFYFGFGFSYSVYGCWKRKHRADGSLNAEQGNYVAPTPGRSLEVSYASKRSTYDDDSNDRQGAGVCGYLFQIVFQITAGAVVLTDSVFWLVLYPFLTSRALNFLLVCMHSINATFLLGETALNSLVRSCAVPFFFPFFLVDIFVFSAGQRFPMFRIGYFLLWTSIFVVFQWIIHVCVSLRWPYPFLDLSSPYAPLWYLGVGVMHIPCYGIFALIIRMKRSLLSRTRCQSCLR 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40158950 40165357 + BLOR21949 Blo16g01162 72353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01162 429 PANTHER UNCHARACTERIZED 81 338 - -
Blo16g01162 429 PANTHER PROTEIN, PUTATIVE-RELATED 81 338 - -
Blo16g01162 429 PANTHER PROTEIN, PUTATIVE-RELATED 346 427 - -
Blo16g01162 429 PANTHER UNCHARACTERIZED 346 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01162 - - - jre:109019916 431.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01162 Blo-Chr16:40158950 Blo17g00499 Blo-Chr17:7447932 5.95E-65 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g668 . Blo16g01162 . Bda11g01275 Bpe13g01472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01275 . . . . . . . . Cma05g00024 . Car05g00020 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01162 Blo_Chr16 FPKM 3367.578369 3443.318359 21.335314 23.294641 0.084491 0.051727 0.158755 1.918877 0.793503 0.489109
Blo16g01162 Blo_Chr16 FPKM 3195.010498 3409.490967 24.527311 23.656424 0.084491 0.146786 0.123085 2.025532 0.97813 0.605913