Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01165 ATGGATGACTTTTACGCCCAGCAATCAGGCGGGGAGTACTCGGAGGAGGCGATGATGTCGCCTGAAAACCATGTCCTACCTGTAAACTACCAGAACTTGTTCTCATACGGAGCCTTCCGCGATCGTTTTCCGATATGTGGATCCGATGAATTGCTCTCAGCCACTTCCGTCGTTTCTGAAGCTGAAGCTGCTTCTGTTACGCCAGAAATTCAAAGGGAAGAAGACATGGTCAGCATGATAAAGGCCAAAATTGCCTCTCATCCTTTCTATCCTCGTTTGCTCGACACGTATATTGACTGCCAGAAGGTAGGGGCGCCGCCGGAGATTGCATCTTTGTTGGAAGAAATCCGACGAGAAAACGACTTTTATAAAAGAGACACAGTTTCAATGGGTTTCGGAGCTGATCCCGAGCTTGACAATTTCATGGTAACGTACTGTGATATCCTGGCCAAATATAAATCAGATCTTGCAAGGCCTTTCGATGAAGCAACAACGTTCTTGAACAAGATTCAGTTACAGCTTAGTAGTCTCTCCACCGGCGCCTCCGAGAGAAGCCCTTCCGAAGACACTAGCAATCAAGAATCTATTAACAGCGGAATGAATGTGAAGCTTATTTCGGTATTTCAGGCTGATGAGCTTCGTGCATTTGATCATGAAGTTGTTATAGATGTGCATTCGATCTCAACTTCTTTAGACGATGAGTTTCATTCATTGTGCGACTCTGTAGATGATGATGGGAAGAGTAGGTCTCAACTAGAATGGGATGGCGCTGAATCTTCAGACGATGACAATGGCGGAAGAGAGCAGGCTGAGGAGCGAGAGGGTGCAAGGAGGGGAGAGGGAAGTCATCTGAAAGACGTGCTCTTTCGCAAGTTTGGCAGACAGATCGGAAGCTTGAAAGTGGAATTCTCAAAGACGAAGAAAAAGGGAAAATTACCAAAAGAAGCTCGCCAGACATTGCTCGAATGGTGGGATGTTCACAATAAATGGCCATATCCCACTGAAGCTGATAAGATAGCACTGGCGGAGGCGACGGGGCTGGATCAGAAGCAAATCAACAACTGGTTTGTTAATCAAAGGAAGCGGCACTGGAAGGCTTCTGAGAATATGCAGTTTGCCTTGTTGGATAATATGCCCCCGCCATTCTTTGGAGATTGA 1158 46.46 MDDFYAQQSGGEYSEEAMMSPENHVLPVNYQNLFSYGAFRDRFPICGSDELLSATSVVSEAEAASVTPEIQREEDMVSMIKAKIASHPFYPRLLDTYIDCQKVGAPPEIASLLEEIRRENDFYKRDTVSMGFGADPELDNFMVTYCDILAKYKSDLARPFDEATTFLNKIQLQLSSLSTGASERSPSEDTSNQESINSGMNVKLISVFQADELRAFDHEVVIDVHSISTSLDDEFHSLCDSVDDDGKSRSQLEWDGAESSDDDNGGREQAEEREGARRGEGSHLKDVLFRKFGRQIGSLKVEFSKTKKKGKLPKEARQTLLEWWDVHNKWPYPTEADKIALAEATGLDQKQINNWFVNQRKRHWKASENMQFALLDNMPPPFFGD 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40199397 40206642 + BLOR21952 Blo16g01165 72356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01165 385 Pfam Homeobox KN domain 323 362 IPR008422 GO:0003677|GO:0006355
Blo16g01165 385 MobiDBLite consensus disorder prediction 242 281 - -
Blo16g01165 385 CDD homeodomain 315 365 IPR001356 GO:0003677
Blo16g01165 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 195 - -
Blo16g01165 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 208 376 - -
Blo16g01165 385 SUPERFAMILY Homeodomain-like 305 380 IPR009057 -
Blo16g01165 385 ProSiteProfiles 'Homeobox' domain profile. 303 366 IPR001356 GO:0003677
Blo16g01165 385 SMART HOX_1 305 370 IPR001356 GO:0003677
Blo16g01165 385 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Blo16g01165 385 SMART ELK_2 283 304 IPR005539 GO:0003677
Blo16g01165 385 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
Blo16g01165 385 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 195 - -
Blo16g01165 385 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 208 376 - -
Blo16g01165 385 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Blo16g01165 385 Pfam KNOX2 domain 133 177 IPR005541 GO:0003677|GO:0005634
Blo16g01165 385 ProSitePatterns 'Homeobox' domain signature. 341 364 IPR017970 GO:0000981|GO:0006355
Blo16g01165 385 Gene3D - 301 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00850 Blo-Chr7:26854556 Blo16g01165 Blo-Chr16:40199397 8.05E-15 dispersed
Blo11g00917 Blo-Chr11:19138509 Blo16g01165 Blo-Chr16:40199397 2.93E-126 dispersed
Blo13g00130 Blo-Chr13:3823524 Blo16g01165 Blo-Chr16:40199397 2.77E-20 dispersed
Blo13g00994 Blo-Chr13:32344218 Blo16g01165 Blo-Chr16:40199397 5.37E-61 dispersed
Blo14g00017 Blo-Chr14:130271 Blo16g01165 Blo-Chr16:40199397 7.36E-60 dispersed
Blo15g00018 Blo-Chr15:126555 Blo16g01165 Blo-Chr16:40199397 7.62E-14 dispersed
Blo16g01165 Blo-Chr16:40199397 Blo12g01065 Blo-Chr12:28422696 1.81E-22 dispersed
Blo16g01165 Blo-Chr16:40199397 Blo01g01479 Blo-Chr1:54145214 4.18E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13476 PF03791 KNOX2 9.50E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01165 - - zju:107428634 381.719