Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01168 ATGGAAGGAAGTACGAGGAAGAAATTGCATCATTTTCGTCGGAGAAGAAGACAAGAGGAAAGTACACAAATAGGAGGGGATTTGGCGAGAGACAAACTATCAAAGATGGTTTCTAGCAGCTGTAATATCTCCGCTCTTCATATTCTTGTACTGTTTCTTCTTTTCGTTTCGTTCGGTTGTCCTGTTCTTTCGTCGGAGAGCGGCGGAGATCTTCGGTCCACCAATCAAACTCTCCGGGCAAAGGAACAAGTGAGAAAGTTGCGGATTATAAGAGCTCGTCTGAAGATGATTAACAAGCCTTTTGTTAAGACAATTCAGGCATTTCCCTCGACAACTCTTCGTATTTTCTGTTTGTTGAGTCCTGACGGAGATATTATAGACTGCGTTGAATCTCATCAGCAGCCAGCTTTTGATCATCCTCTGTTGAAGGGACAGAAGCCTTTGGACCGGCCGGAGAGCCCGAAAGGGCATAATCCGACTGGAACGGCGGAAGATAGTTTCCAATTATGGAGTCTTTCCGGCGAATCATGTCCAGAGGGAACAGTTCCAATTCGACGAACAACAGAGAAAGACATACTAAGAGCTAGCTCTGTTCTGAGATTTGGAAGCAAAGTGGGAAGGGGTGTTAGAAGGGATTCTTCCAGCACTGGGCATGAGCATGCAGTTGGGTACGTGAGTGGAGAAGAGTACTACGGCGCAAAGGCAAGCATAAATGTGTGGGCGCCTCGCGTGGTCAATCAGTACGAATTCAGCCTGTCTCAAATGTGGGTTAGTCCAGAGCTGTACGGCGATAGAGTTCCAAGATTTTTCACTTACTGGACCACGGACGCGTATCAAGCCACTGGGTGCTACAATCTTCTCTGCTCTGGCTTTGTGCAGACGAATAGCAAAATTGCAATCGGCGCTGCCATTTCTCCCGTTTCCTCCTACAACGGCGGCCAGTTTGACATCAGTTTGCTCGTTTGGAAGGATCCTAAGCATGGAAACTGGTGGCTGGAATTCGGGTCGGGAGTGCTGGTGGGATACTGGCCGGCGTTGCTCTTCAGCCACCTGAGAGACCACGCAACGATGGTGCAATTCGGCGGAGAAACGGTGAACTCAATGCAATCCGGGTTTCACACATCGACCCAAATGGGAAGCGGGCATTTCGCAGAGGAGGGATTCGGAAAAGCCTCATATTTTCGAAACCTGCAGGTGGTTGACTGGGACAACAGCTTGATTCCTCTATCAAATCTGAAAGTATTGGCGGATCATCCTAATTGCTACGATATCAGAGGCGGAATCAACCGGGTATGGGGCAACTACTTTTACTACGGCGGGCCGGGTCGAAACGTCCGATGTCCCTGA 1347 48.92 MEGSTRKKLHHFRRRRRQEESTQIGGDLARDKLSKMVSSSCNISALHILVLFLLFVSFGCPVLSSESGGDLRSTNQTLRAKEQVRKLRIIRARLKMINKPFVKTIQAFPSTTLRIFCLLSPDGDIIDCVESHQQPAFDHPLLKGQKPLDRPESPKGHNPTGTAEDSFQLWSLSGESCPEGTVPIRRTTEKDILRASSVLRFGSKVGRGVRRDSSSTGHEHAVGYVSGEEYYGAKASINVWAPRVVNQYEFSLSQMWVSPELYGDRVPRFFTYWTTDAYQATGCYNLLCSGFVQTNSKIAIGAAISPVSSYNGGQFDISLLVWKDPKHGNWWLEFGSGVLVGYWPALLFSHLRDHATMVQFGGETVNSMQSGFHTSTQMGSGHFAEEGFGKASYFRNLQVVDWDNSLIPLSNLKVLADHPNCYDIRGGINRVWGNYFYYGGPGRNVRCP 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40225213 40227569 + BLOR21955 Blo16g01168 72359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01168 448 Pfam Neprosin activation peptide 120 224 IPR025521 -
Blo16g01168 448 MobiDBLite consensus disorder prediction 138 165 - -
Blo16g01168 448 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 38 448 - -
Blo16g01168 448 PANTHER - 38 448 - -
Blo16g01168 448 Pfam Neprosin 256 441 IPR004314 -
Blo16g01168 448 MobiDBLite consensus disorder prediction 1 23 - -
Blo16g01168 448 Gene3D - 238 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01168 - - - tcc:18609522 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00890 Blo16g01168 CCT
Blo06g00890 Blo16g01168 ECH
Blo01g00390 Blo16g01168 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00223 Blo-Chr16:5012117 Blo16g01168 Blo-Chr16:40225213 0 dispersed
Blo16g01168 Blo-Chr16:40225213 Blo17g00550 Blo-Chr17:9781917 2.16E-140 dispersed
Blo01g00390 Blo-Chr1:4414220 Blo16g01168 Blo-Chr16:40225213 0 wgd
Blo16g01168 Blo-Chr16:40225213 Blo04g00727 Blo-Chr4:6720760 0 wgd
Blo16g01168 Blo-Chr16:40225213 Blo06g00890 Blo-Chr6:32121509 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g642 Blo01g00390 Blo16g01168 Bda01g02212 Bda11g01281 Bpe13g01479 Bpe10g00850 . Bma15g00174 . . . Cma18g00779 . . Sed06g1661 . . Bhi07g01763 Tan04g1276 Cmetu10g1375 . . . . Cla05g02570 Cam05g2755 Cec05g2788 Cco05g2827 Clacu05g2756 Cmu05g2607 Cre05g2722 . . . . Lsi04g00574 Csa05g02311 Chy10g00880 Cme10g00550 Blo06g00890 . . Bda11g01281 . . Bma01g00040 Bma06g00606 . . . Cma04g01749 Cma05g00037 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002792 3 2 3 2 2 2 0 2 2 2 2 2 1 1 2 2 2 2 0 2 2 2 2 2 1 2 2 4 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01168 Blo_Chr16 FPKM 6.63901 8.807143 29.440323 25.898014 8.356389 7.733648 9.715003 24.710419 21.496552 19.536041