Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01178 ATGGACGCAGCCGAGGACCGACCCCCCGCTTTACAGCCAATTGCAGCTCATTTAGCAACTTCTGTGCTGCCGTTTCAGCGGAGTCAACGGCATTGCTACGGAGAGTCAGTTCCCGGGGAATTTCCATTGGCTGCAAATCCCTCCATTCTCCTGCATATCCTTTCTTCTTGTAATTTGAACTCTCATGATCTTGCAAAACTAGAGGCAACATGTTCCTTCTTCAAGCAGCCGGCGAATTTCGAGCCTGATTTCCAGCTATCCATTTCAGAGCTAGCTGCTTTCTATATGTGCAGAAAGAGGGCTATATTTAAGCCGATGACGATGGAAGAACAAAGCCATTTGAAGCACGGATGTGGAGGTTCGTGGAAACTGGTATTAAGGTTCTTGTTGGCCGGAGAAGCATGTTGCCGGAGGGAGACCTCTCAGGCCGTAGCCGGACCAGGTCATAGTGTAGCCGTTTCTTCAAAAGGCGTCGCTTATACTTTCGGGTCTAACAACTCAGGACAGCTTGGACATGGCACCATCGAAGAAGAATGGCGGCCTCGACCAATCAGATCTCTGCAAGGGATTCAAATCATCCACGCAACGGCAGGGGCGGGGAGGACGATGCTAATCAGCGATGCTGGCAAGGTATATGCCACTGGCAAGGACTGCTTTGGTGGGGCTGATTATGAGCTTGAAATGTCTAAAATGGCTACCACTCCAGTGCTGGTTGATGCTTTAAAGGACATTTTTGTGGTGCAAGCTGCAATTGGAAACTTCTTCACCGCTGTGTTGTCGAGAGAAGGCCGAGTTTACACGTTTGGTTGGGGCAGTGAGGCTAGACTCGGCCACCAAACCGATCCCGACGATATCGAGCCTCGTCCTTTGTTGGGAGCTCTTGAAAACATACCAGTTGTTCAAATAGCAGCTGGATATTGCTTTCTTCTTGCTCTGGCTTGTCAACCCGGCGGCATGTCAGTTTATTCTGTGGGCTGTGGGTTGGGAGGGAAGCTAGGCCATGGCTCGAGAAGCGACGAGAAGCAACCAAGGCTGATTGAACAGTTTGAGGCATTGAAGCTTCAGCCAGTGGCAGTTGCAGCCGGTGCTTGGCATGCAGCCGTGGTGGGGCAAGACGGTCGAGTCTGCACGTGGGGGTGGGGCCGTCACGGGTGCTTGGGCCATGGAAACCAAGAATGTGAATCGCTTCCTAAGGTGATCGAGTCCTTGAGCCATGTCAAAGCAGTCCATGTCGCAACAGGCGATTACACAACTTTTGTCGTAGGCGACGATGGCGATGCATACTCTTTCGGGAGCGGAGAATTTGCTAATCTCGGTCATAATGACCCTGCTGAAGGACAGGAAAACAGGTATGCAAATGTGTTAAGCCCAAAGATTGTTAGATCATTGAAGGGAGGGAAGGAGAGGGTTGTGCAGATAAGCCTCACTAATTCCGTTAACCATAACGCGCACACACTTGCACTGACTGAGTCAGGGAAGCTCTACGCGTTTGGAGCCGGAGATGAAGGGCAGCTCGGGATGCAGCTCGAGTCTAACCAGACCGACAGGGGGAGCCCGGAGCTTGTTGATATTGATCTCAGCTAG 1584 51.52 MDAAEDRPPALQPIAAHLATSVLPFQRSQRHCYGESVPGEFPLAANPSILLHILSSCNLNSHDLAKLEATCSFFKQPANFEPDFQLSISELAAFYMCRKRAIFKPMTMEEQSHLKHGCGGSWKLVLRFLLAGEACCRRETSQAVAGPGHSVAVSSKGVAYTFGSNNSGQLGHGTIEEEWRPRPIRSLQGIQIIHATAGAGRTMLISDAGKVYATGKDCFGGADYELEMSKMATTPVLVDALKDIFVVQAAIGNFFTAVLSREGRVYTFGWGSEARLGHQTDPDDIEPRPLLGALENIPVVQIAAGYCFLLALACQPGGMSVYSVGCGLGGKLGHGSRSDEKQPRLIEQFEALKLQPVAVAAGAWHAAVVGQDGRVCTWGWGRHGCLGHGNQECESLPKVIESLSHVKAVHVATGDYTTFVVGDDGDAYSFGSGEFANLGHNDPAEGQENRYANVLSPKIVRSLKGGKERVVQISLTNSVNHNAHTLALTESGKLYAFGAGDEGQLGMQLESNQTDRGSPELVDIDLS 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40329350 40331655 - BLOR21965 Blo16g01178 72369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 527 IPR000408 -
Blo16g01178 527 Gene3D - 316 526 IPR009091 -
Blo16g01178 527 Gene3D - 134 315 IPR009091 -
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 209 262 IPR000408 -
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 157 208 IPR000408 -
Blo16g01178 527 SUPERFAMILY RCC1/BLIP-II 140 442 IPR009091 -
Blo16g01178 527 Pfam Regulator of chromosome condensation (RCC1) repeat 157 205 IPR000408 -
Blo16g01178 527 Pfam Regulator of chromosome condensation (RCC1) repeat 372 421 IPR000408 -
Blo16g01178 527 Pfam Regulator of chromosome condensation (RCC1) repeat 262 312 IPR000408 -
Blo16g01178 527 Pfam Regulator of chromosome condensation (RCC1) repeat 424 474 IPR000408 -
Blo16g01178 527 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 372 IPR000408 -
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 424 IPR000408 -
Blo16g01178 527 PRINTS Chromosome condensation regulator RCC1 signature 249 265 IPR000408 -
Blo16g01178 527 PRINTS Chromosome condensation regulator RCC1 signature 265 279 IPR000408 -
Blo16g01178 527 PRINTS Chromosome condensation regulator RCC1 signature 159 175 IPR000408 -
Blo16g01178 527 PRINTS Chromosome condensation regulator RCC1 signature 362 380 IPR000408 -
Blo16g01178 527 PRINTS Chromosome condensation regulator RCC1 signature 140 153 IPR000408 -
Blo16g01178 527 PRINTS Chromosome condensation regulator RCC1 signature 420 441 IPR000408 -
Blo16g01178 527 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 527 - -
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 315 IPR000408 -
Blo16g01178 527 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 359 369 IPR000408 -
Blo16g01178 527 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 11 527 - -
Blo16g01178 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 491 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01178 - - - jre:108990808 828.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo11g01031 Blo16g01178 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g01031 Blo-Chr11:27380020 Blo16g01178 Blo-Chr16:40329350 0 dispersed
Blo16g01178 Blo-Chr16:40329350 Blo05g00521 Blo-Chr5:9551003 2.02E-27 dispersed
Blo16g01178 Blo-Chr16:40329350 Blo06g00181 Blo-Chr6:7604980 5.22E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01178 Blo_Chr16 FPKM 13.208561 14.481154 11.470467 10.918426 6.11059 6.112309 5.930662 18.34889 18.608423 18.323915