Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01181 ATGTTCTTCCATCTCCTGCCTTTTTCTCTTTACCCTTGCTTCTTTCTAGATTCCAAAGCCCAACCCATTCCTTCTGCTTCAGTTTCCATGGACTGCAACAACAAGTTGAATCAAGGAGGTGACAGTCGGCTTGAGCTTTACTTCTCAAGTCCAACGAATACTCAACAGGAACGGACATTTCGCCGAAGGGTAGTTGTGAGTCAAAACTCAGTGCAAAAACCGAGACGAGATGGAAAAAAGAGGAAAAGAGTAGTTGATGAGACTTGTTCTGAAGATGGTTTGGTTCAAGATGAAAACAAGTTGAATTCTTCTGATAGTTCGGCTGAGCAGAACTTGAGCACCAACCCCTCTAGGGGCTCTGTGCTGCAGGCCTGCATCGTTACTTCCGGATTGATGGCTGCAGTGGGAATTGCAGTTAGACAGGTATCTCATATTGCATCAGTAGAAGGATTGCCCATCCTTGACTGCACTTCTGAAGTATCATTTGGTTTTGAGATGTGGCATCTGGAGTTGATTGCGGGATTGGTCGTACTGATTTCCTCAAGCCGATATTTTTTATTGGAAGCATGGCCAGACTTTGCCGAATCTAGTGATGCAGCTAATAAGCAGGTCCTCACTTCACTTCAACCTATGGATTACATAATCGTGGCGTTTCTTCCCGGGATTGGCGAGGAACTACTTTTTCGTGGAGCTCTACTTCCGCTATTCGGATTCTATTGGAAAGGCGTGTTGGTAGTGGCCGTCATTTTTGGCGTTCTACACTTGGGCGGTGGACGCAAGCATTCATTCGCAGTTTGGGCAACCTTCGTGGGGCTTGTTTATGGATATGCCACTGTCATGTCATCGAGCATGGTCGTTCCGATGGCTTCTCATGCGTTGAATAATTTGACGGGGAGAGCTCTACCGAAATTTGGCGAATGGGACGTGAACGATCCAGCATCAGCCGAAGGATTTACTGTCATCTTCAACAAAGCAAGAGACAAGAAGACTGGTGCACCTTCTGAAACTAAGAAATCACAGGCAAACGACAAAGACGATTGTTCCGCAAAGGTCAAGGCTGAGCCTTTTTGGGTTGCTGTGCTGTCCGTTTTGGGTTGTCTATATGTTCTGGAATTCTTTTCGGCTTTCCTCAACTGGGTATACGTCAATTTTCTCAGACCACCGAAGAACCTCAAGAGCTTTGGATCCTGGGCAGTCGTCACAGGTCCGACCGACGGCATGGGCAAGGGCTTCGGGTTTGAATTGGCGCGCAAAGGTCTTAATCTGGTTTTAGTGGGCCGAAACCCAGACAAGCTAAAAGATGTTTCTGACTCAATCCAGGCCAAATGTTATAAGACCCAGATGAAAACCGTTGTCGTTGATTTCTCCGGTGATCTTTCTGAGGGGATAAACGTTGACGGGACGACAAAGGTTACTCGAGCTGTCCTTGCCGGAATGCTCAAGAGAAAGCGAGGAGCCATCGTCAATATTGGTTCAGTTGCAGCCATTGTGATTCCGTCTGATCCACTCTACGCTGTTTATGCTGCCACGAAAGCTTACATTGTTCAATTCTCAAGGAGCCTCTACGTTGAATACATGAAGAGTGGCATAAATGTGGAGTGCCAGGGACCTCTCTCTCTCTCTCTCTCTCTCTCTAGGAAAATGAAAAAAGTAAAGACTGAAATTTAG 1668 46.52 MFFHLLPFSLYPCFFLDSKAQPIPSASVSMDCNNKLNQGGDSRLELYFSSPTNTQQERTFRRRVVVSQNSVQKPRRDGKKRKRVVDETCSEDGLVQDENKLNSSDSSAEQNLSTNPSRGSVLQACIVTSGLMAAVGIAVRQVSHIASVEGLPILDCTSEVSFGFEMWHLELIAGLVVLISSSRYFLLEAWPDFAESSDAANKQVLTSLQPMDYIIVAFLPGIGEELLFRGALLPLFGFYWKGVLVVAVIFGVLHLGGGRKHSFAVWATFVGLVYGYATVMSSSMVVPMASHALNNLTGRALPKFGEWDVNDPASAEGFTVIFNKARDKKTGAPSETKKSQANDKDDCSAKVKAEPFWVAVLSVLGCLYVLEFFSAFLNWVYVNFLRPPKNLKSFGSWAVVTGPTDGMGKGFGFELARKGLNLVLVGRNPDKLKDVSDSIQAKCYKTQMKTVVVDFSGDLSEGINVDGTTKVTRAVLAGMLKRKRGAIVNIGSVAAIVIPSDPLYAVYAATKAYIVQFSRSLYVEYMKSGINVECQGPLSLSLSLSRKMKKVKTEI 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40347598 40353818 - BLOR21968 Blo16g01181 72372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01181 555 PANTHER CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN 57 302 - -
Blo16g01181 555 Pfam short chain dehydrogenase 463 537 IPR002347 -
Blo16g01181 555 MobiDBLite consensus disorder prediction 65 116 - -
Blo16g01181 555 PRINTS Glucose/ribitol dehydrogenase family signature 397 414 IPR002347 -
Blo16g01181 555 PRINTS Glucose/ribitol dehydrogenase family signature 479 495 IPR002347 -
Blo16g01181 555 PRINTS Glucose/ribitol dehydrogenase family signature 507 526 IPR002347 -
Blo16g01181 555 MobiDBLite consensus disorder prediction 80 94 - -
Blo16g01181 555 MobiDBLite consensus disorder prediction 95 116 - -
Blo16g01181 555 Gene3D - 460 551 - -
Blo16g01181 555 Gene3D - 392 459 - -
Blo16g01181 555 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 395 537 IPR036291 -
Blo16g01181 555 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 298 329 IPR008700 -
Blo16g01181 555 Pfam Type II CAAX prenyl endopeptidase Rce1-like 212 296 IPR003675 GO:0004222|GO:0016020|GO:0071586
Blo16g01181 555 PANTHER CAAX AMINO TERMINAL PROTEASE 57 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01181 K07052 K07052; CAAX protease family protein - qsu:112000675 329.717
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00377 Blo16g01181 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00816 Blo-Chr6:31407292 Blo16g01181 Blo-Chr16:40347598 1.06E-59 dispersed
Blo02g00143 Blo-Chr2:1244370 Blo16g01181 Blo-Chr16:40347598 2.26E-13 transposed
Blo01g00377 Blo-Chr1:4349598 Blo16g01181 Blo-Chr16:40347598 1.14E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g587 Blo01g00377 Blo16g01181 Bda01g02198 . Bpe13g00515 . . Bma15g00252 . Cmo18g00714 . Cma18g00728 . Car18g00676 . Cpe09g00562 . . . . . . . . Cla05g02626 . . . . . . . . Cone8ag0712 Cone12ag0692 . Csa05g02249 Chy10g00818 . . . . . . . Bma01g00029 . . . . . . Car04g01813 . . . . . . . . . . . . . . . . . . . . .
Vvi1g1113 . Blo16g01181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0713 . . . . . . . . . . . . Bma06g00586 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008906 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01181 Blo_Chr16 FPKM 15.313966 16.102219 3.099979 2.742695 10.709538 8.477207 10.411032 0.495432 0.478445 0.399536