Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01182 ATGGATAATGGGTTCTCTTCTCCCCGAAGCGATGCGTTTCCGGCCGGTCTCCGGGTTCTCGTCGTCGACGACGATCTAACTTGGCTCAAAATTCTCGAAAAGATGCTCAAGAAATGCTCTTACGAAGTGACAACATGTGGTCTAGCTAGAGAAGCACTAAATTTACTCCGCGAAAGGAAAGATGGATACGACATTGTAGTCAGCGACGTCAACATGCCCGACATGGACGGCTTTAAACTTCTCGAGCATGTCGGTCTCGAGATGGATCTTCCCGTCATAATGATGTCTGTTGATGGAGAAACAAGTCGAGTCATGAAAGGCGTTCAACACGGAGCTTGTGACTATCTGCTCAAGCCGATAAGGATGAAAGAACTTAGAAATATATGGCAGCATGTCTTAAGAAAGAAGATACACGAGGTTCGGGAAATTGAAGGTCATGATTGTTTTGAAGGAGTGTTCGGCCGAACCGGATCGGAGCAATCCGATGACGGGCAATTTATTCGAGGAGAAGACATGAGTAATTTATTGAAGAAAAGAAGGGATTTTGATCAGCATGATGAGAAAGACATTGGTGATGCTTCTTCGATGAAGAAAGCTCGAGTAGTTTGGTCTGTCGATCTTCATCAGAAATTTGTGAAAGCAGTGGATCAGATTGGTTTCCAAAGAGTAGGCCCCAAAAAAATACTTGATTTGATGAATGTCCCATGGCTGACAAGAGAAAATGTTGCCAGCCACTTGCAGAAGTATCGTCTTTACCTGAGTAGGCTGCAAAAGCAAAATGATGGAAAGAGTTGTGGTATGGGGATGAAGGCCTTTGATGTATCTTCAAATGCTCCAACAGCAGCTTCCTGCCTTCAAAACACACCACATGTGAATCAAAATGAAGGTCAAAATCTCAAACATGGCCTCCCCGGCAGCAACTTCGTCCTTCAAACAAATGAACTTGAGCGCAATTTGCAGAGGATTGTCTCCGAGCCTGCACCAGAGCTCAAACGGGCGTTGAGTTCTAGGCCTACGGATTCTAACAAGACCTGGAAGATGAAATTCAGTCATGCAGAACTGAATTTTGCAGCATCACAGCAGACCCAGATTGAAGCTTTAGAAAGTCACCTAAAAGCGGAAAACAAAACACACATGCTTTGGAAAAGTGATTTCATCGATCTTCCATTGGCGAATCTGCAATCTAACTTCCAAGTCGATCAACTTGAATCCATTTCGTCAATCAGTTCGAGACCTTCAATACGAGAAGCGGAGATTCCCAGCTCCATCACAACAGTCGGTGTAAATAAAGTGCAATATCTGTTCGACTCTTTTCCTGCTCAACATGGTATCGACGAAGTAAATCATCCTTTTGAACCACCCTCTTCAACTACTTCAATCGGGATGAAAAAGCAAGATCTCATCGAGAGCTGCCTATCAGAAACGGGAAGAGGGCTGCATTCGGACTTGTTTGACGATGGCATGCAGCTTTGCTGGCTGCAAGAGGATTGCATCGTTAAGAATTTAGACTTCGCTGATTGCAAAGATTCAGGGCTCATCACTGATTATATTGGGTACGATCCAACAGAATATATTCTGATCGATGATGATGAAAATGATGAAGACAGAATAAGTCAGCAGGTTCAAGATCTTGATTTGGAGAGTGGATATGGTGGGCGTTACAATGTTTGA 1671 43.87 MDNGFSSPRSDAFPAGLRVLVVDDDLTWLKILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVVSDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIHEVREIEGHDCFEGVFGRTGSEQSDDGQFIRGEDMSNLLKKRRDFDQHDEKDIGDASSMKKARVVWSVDLHQKFVKAVDQIGFQRVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQNDGKSCGMGMKAFDVSSNAPTAASCLQNTPHVNQNEGQNLKHGLPGSNFVLQTNELERNLQRIVSEPAPELKRALSSRPTDSNKTWKMKFSHAELNFAASQQTQIEALESHLKAENKTHMLWKSDFIDLPLANLQSNFQVDQLESISSISSRPSIREAEIPSSITTVGVNKVQYLFDSFPAQHGIDEVNHPFEPPSSTTSIGMKKQDLIESCLSETGRGLHSDLFDDGMQLCWLQEDCIVKNLDFADCKDSGLITDYIGYDPTEYILIDDDENDEDRISQQVQDLDLESGYGGRYNV 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40356446 40359618 + BLOR21969 Blo16g01182 72373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01182 556 CDD REC_typeB_ARR-like 19 133 - -
Blo16g01182 556 SMART REC_2 17 129 IPR001789 GO:0000160
Blo16g01182 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Blo16g01182 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 2 508 - -
Blo16g01182 556 Gene3D - 17 166 - -
Blo16g01182 556 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Blo16g01182 556 SUPERFAMILY CheY-like 16 139 IPR011006 -
Blo16g01182 556 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Blo16g01182 556 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Blo16g01182 556 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Blo16g01182 556 Coils Coil 357 377 - -
Blo16g01182 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 508 IPR045279 GO:0009736
Blo16g01182 556 Gene3D - 195 257 - -
Blo16g01182 556 Coils Coil 527 547 - -
Blo16g01182 556 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00756 Blo-Chr16:31212837 Blo16g01182 Blo-Chr16:40356446 3.94E-90 dispersed
Blo16g00870 Blo-Chr16:36260074 Blo16g01182 Blo-Chr16:40356446 1.21E-83 dispersed
Blo16g01182 Blo-Chr16:40356446 Blo01g00772 Blo-Chr1:11099972 5.84E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13478 PF00072 Response_reg 3.60E-23 CL0304 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01182 - K14491 csv:101204370 513.842