Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01188 ATGCCACCCACTAATTTTCCTCTCCGGTGGGAGAGCACGGGGGACCAGTGGTGGTACGCCTCGCCTATTGATTGGGCTGCTGCCAATGGCCTATACGACGTCGTCAGGGAGCTTCTCCACCTCGACTCAAATCTCCTCATCAAGCTCACTTCCCTTCGGCGAATTCGCCGCCTCGAAACAGTGTGGGACGACGAAGCTCAGTTTTCTGATGTGGCCGAATGCCGCTCCAGGGTTGCCAAAAAGCTTCTCCTCGAAGCGGAATTGAACAACGGTCAGAACTCTCTCATTCGAGCCGGTTATGGCGGTTGGCTTCTCTACACTGCTGCCTCCTCCGGAGACCTGGGTTTTGTCACTGATTTGTTGCAGAGAGATGCTCTACTTGTTTTCGGAGAAGGGGAATTCGGGGTCACTGACATACTTTACGCTGCGGCCAGAGGAAAAAACTCTGAGGTTTTCAAGCTCCTTCTCCACTACGCAATTTCACCGAGATGCTATTTTAGCTCCGGCCCGGAAACAGAGAAGCAGTTGCCCGAAAGAGAAACTTTTTCAACTTTTGGGTGGGAGGTGATGAACAGGGCCGTTCATGCGTCGGCCAGAGGAGGGAATTTAGAGATTTTAAAGAACCTTCTTGGGGATGAGCCTGATATTCTGGTTTACAGAGACGCACATGGCTCCACCATCTTGCATTCAGCCGCCGGTCGAGGACAGGCCGAGGTAGTGAAGGATCTTGTAGAATCATTTGACATCATCTTCTCCACAGATAATCAAGGGAATACAGCTTTACACGTTGCTGCTTACAGAGGCTGCTTATCTGTGGTGGAGCTGCTGATTCAAGCGTCCCCCTCTCTGAAGGCTTCAACCAACAACCTCGGAGACACTTTTCTTCACATGGCAGTCGCCGGTTTCAGAGCCCCTGGTTTCCGACTATTAGACAAGCAAATTGAGCTGGTTAAGCAGATAATCGGTGGGAAGCTCCTGGATATGGAGGAGATCATCAATGTCAGGAACAACAAAGGAAGAACTGCTCTTCACATGGCAGTGAGCGAGAATTTCAACAGCGATCTCGTTGAACTCCTGATCTCTGCCAGACGGATTAATTTGAACATCCGCGATGCCGATGGGATGACCCCGCTTGATCTTCTCAAGCACCGACCTCAAACAGCTTCATCTGAGATAATGATCAAGCAAATGATATGGGCCGGAGGAATTGCCAATCAGCTCTATCATGTGGCGAGGAGAGCCCTTGTTTCTCAGTTAAAAATGCATGGCGGTGGGAGAAGTCCTGGAAGTTGTTTTGAAGTTTCTGATGGAGAGATACTCTTGCATACCTCCATAGACGGCATAGGTGATGAAGCTGATGGGTTTGAAATGAGTGGGTGTGAGATAAGTGAGATAGATTCTCCAAACTTGGCAGAGAAGAAGAAACGAGCGAGGAGGCTGAACATTCTTCTTGACAGGGCCAGGAAGAATGGGCAGAGACTTGGCAGCGCAGAAAGTGGAGAAGACGATCTGGAAATGGTCCAGTCAAGTGGGCAGAGATACTCAAAAAGTTTGAGCTTTGCCAATAGTCAAAGGGTATTTTCATTCACACATAGTTTTCCCAGCCCCGCGACAAAAGATAAGTTCATGGCTGGACTCATGCAGGGTGTGATTCAGACAATGCCGCCTTTAGCCATTGCAGCTCCATCGGCTTATTCCCCAAAGGGTGCCAAAATTGGCATAGACAAAGGCTCTAGCTCCAAGGCTAACAGGCAAGGTTCGGTAAATAGTAAGTTGATGAACGAGTACCTGAGTTTTGGAGCTCACGGGTTGGCGGTGGATGAGTTGATCGATCAAAATGACCAGCAATTTTCGTCTATAGTTGCTTGA 1869 49.28 MPPTNFPLRWESTGDQWWYASPIDWAAANGLYDVVRELLHLDSNLLIKLTSLRRIRRLETVWDDEAQFSDVAECRSRVAKKLLLEAELNNGQNSLIRAGYGGWLLYTAASSGDLGFVTDLLQRDALLVFGEGEFGVTDILYAAARGKNSEVFKLLLHYAISPRCYFSSGPETEKQLPERETFSTFGWEVMNRAVHASARGGNLEILKNLLGDEPDILVYRDAHGSTILHSAAGRGQAEVVKDLVESFDIIFSTDNQGNTALHVAAYRGCLSVVELLIQASPSLKASTNNLGDTFLHMAVAGFRAPGFRLLDKQIELVKQIIGGKLLDMEEIINVRNNKGRTALHMAVSENFNSDLVELLISARRINLNIRDADGMTPLDLLKHRPQTASSEIMIKQMIWAGGIANQLYHVARRALVSQLKMHGGGRSPGSCFEVSDGEILLHTSIDGIGDEADGFEMSGCEISEIDSPNLAEKKKRARRLNILLDRARKNGQRLGSAESGEDDLEMVQSSGQRYSKSLSFANSQRVFSFTHSFPSPATKDKFMAGLMQGVIQTMPPLAIAAPSAYSPKGAKIGIDKGSSSKANRQGSVNSKLMNEYLSFGAHGLAVDELIDQNDQQFSSIVA 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40414658 40416612 + BLOR21975 Blo16g01188 72379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01188 622 ProSiteProfiles Ankyrin repeat region circular profile. 256 285 - -
Blo16g01188 622 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 496 - -
Blo16g01188 622 Gene3D - 12 401 IPR036770 -
Blo16g01188 622 ProSiteProfiles Ankyrin repeat profile. 223 245 IPR002110 GO:0005515
Blo16g01188 622 Pfam Ankyrin repeats (3 copies) 195 281 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 338 369 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 223 252 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 18 47 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 290 330 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 100 129 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 189 218 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 134 164 IPR002110 GO:0005515
Blo16g01188 622 SMART ANK_2a 256 285 IPR002110 GO:0005515
Blo16g01188 622 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 496 - -
Blo16g01188 622 SUPERFAMILY Ankyrin repeat 104 386 IPR036770 -
Blo16g01188 622 Coils Coil 470 490 - -
Blo16g01188 622 Pfam Ankyrin repeats (many copies) 331 380 IPR002110 GO:0005515
Blo16g01188 622 ProSiteProfiles Ankyrin repeat region circular profile. 223 245 - -
Blo16g01188 622 ProSiteProfiles Ankyrin repeat profile. 256 288 IPR002110 GO:0005515
Blo16g01188 622 ProSiteProfiles Ankyrin repeat profile. 338 361 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01188 - - - vvi:100242500 712.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00371 Blo16g01188 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01188 Blo-Chr16:40414658 Blo01g00857 Blo-Chr1:15862928 5.49E-20 dispersed
Blo11g00642 Blo-Chr11:6668100 Blo16g01188 Blo-Chr16:40414658 0 transposed
Blo01g00371 Blo-Chr1:4322451 Blo16g01188 Blo-Chr16:40414658 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1145 Blo01g00371 Blo16g01188 Bda01g02190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0728 . . . . . . . . . . . . Bma06g00580 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009176 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01188 Blo_Chr16 FPKM 31.780439 37.583 30.376884 31.131897 20.433277 20.053825 24.916512 36.297176 37.369385 42.588478