Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01189 ATGTGGGGGATTGCGCGAGCTCGATATCGATCTCGTCTTCCTTCGTTCTCTTCTGCCTCATCTTCACCATGGAAGCTAGGGTTGAGCCCGTACTTTTCCTCCTCCCCTATCCACCTCGCTTCCAAAGGTCTGCTCGAACTCGAAGAGGTGGAGAAGATTCTGACGGATGTTAGGGCCGACGACGTTAAGGTCATACCAGTGGGCAACAGCTGTGAATGGGCTGATTACATGGTCATTGCCAGTGGCAGCTCCACCTGGCACGATGTAATTCATACTTTCGAATGTTTGTATGTTCAGGCAAAGCAAAAGCAAAAGGGAGCTCGACGTTTAATCCTTCCCAGCGTTCAAGGTCAAGAGGGGGGCAAGTGGATAGTCGTCGACTCTGGAAAAGTCATAGTGCATGCGCTTGATGAGAAGGCCAGAGCTTATTACAATCTGGAGACTTTATGGACGAGTCAGATATCTCAAAATGAGTCCAATAGTGATTTGGGAAATGCTTTAGTGAAGATCCGTAAAAAGAATAACTCAAAGAAACCGGTGCAGCAAAGTAAATGA 555 47.57 MWGIARARYRSRLPSFSSASSSPWKLGLSPYFSSSPIHLASKGLLELEEVEKILTDVRADDVKVIPVGNSCEWADYMVIASGSSTWHDVIHTFECLYVQAKQKQKGARRLILPSVQGQEGGKWIVVDSGKVIVHALDEKARAYYNLETLWTSQISQNESNSDLGNALVKIRKKNNSKKPVQQSK 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40417315 40419556 - BLOR21976 Blo16g01189 72380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01189 184 PANTHER MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1 30 175 - -
Blo16g01189 184 Hamap Ribosomal silencing factor RsfS [rsfS]. 40 151 IPR004394 -
Blo16g01189 184 PANTHER IOJAP SUPERFAMILY ORTHOLOG 30 175 IPR004394 -
Blo16g01189 184 TIGRFAM rsfS_iojap_ybeB: ribosome silencing factor 48 150 IPR004394 -
Blo16g01189 184 Pfam Ribosomal silencing factor during starvation 49 150 - -
Blo16g01189 184 Gene3D Beta Polymerase, domain 2 45 164 IPR043519 -
Blo16g01189 184 SUPERFAMILY Nucleotidyltransferase 48 152 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01189 - - - jre:109019502 211.075
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1159 . Blo16g01189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014324 0 1 1 0 0 1 0 0 0 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 0 0 0 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01189 Blo_Chr16 FPKM 3.352447 2.725591 4.207102 5.464535 3.728369 3.958353 4.903249 5.165428 4.974716 4.792918