Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01191 ATGTGTTTTCTCCGGTTGCAGCTACATGGACAGATGTGCAAGATACTGTCTGCAATGTATTGCAAAGTGTTGTCTATTTTCCCATCTTTAGAAGCAGCAAAGTCGAGAAGTAAGTCAGGCATTCAAGCATTATGCTCCTTGCATGTAGCAATGGAGAAGACAAAAAATATTCTTCAACACTGGTCAGAATGTAGCAAACTCTACTTGGCTATAACCGGAGTGTCTGTCCTATCAAAATTTGAGAAAGCAAGATATTGTCTCGCAGACAGTCTCAAACGGGACGAAGACATTGTTCCACAATCTGTTGGCTTTCAGATACAAGAGATAATTTGTGAACTCGAGAGCATTGAGTTTTCACTTGATCCATTGGAGAAGCAAGTCGGCAATGATTTGATAATACTACTTCAACAAGAGCAAAAATTTAGCAACTCCATTGAGAATAACGAGGTTGTATCTTTTCATCAATCTGCATTGAGACTTGGAATGATCTCTTCTAGAACAGCCCTTACAGAGAGAAGAGCCTTAAAGAAACTCGTCGAAAAAGCTCGCACTGAAGAAGACAAGCAGAAAGAATCTATCGTGACTTACCTTTTGCATCTCATGAGGAAATACTCAAAACTTTTTTGGAACGAGTTTTCCAATGAAAACAACTCACCAGGCTCTACGCCATGTTCACCTGGGAAAATCAGCCCTGGTTGTATCAATCAAACCTTTGAAAGGCAACTATTGAAGCATAGTTCGATTAATTTCAAGCCCGGAAATAAGAAATCAGGGCAGATGACCATCCCACCTGAAGAACTAAGGTGTCCAATATCTTTGCACCTCATGTATGACCCTGTAATTATAGCTTCTGGCCAAACATATGAACGGAGTTGTATTGACAAATGGTTTAATGATGGTCATAGCTCCTGTCCAAAGACTCAACAGAAGCTCTCTCATCTTTCTCTGACCCCTAATTACTGCGTCAAGAGCCTCATTGCTAGTTGGTGCGAGCAAAGTGGAGTTCCTCTTCCAGATGCCCCGCCAGAGAGCCTGGATCTTAACTATTGGAGGCTTGCATTATCTGAATGTGAGTCTGTTAATTCAAGATCTATGGACAGGCTTGGCTCTTGCAAACTGAAGGGAGTCAAGATAATTTTCTTGCTGAAGGATGACGAGGAGTCCAGGACACATATGGGGGCTAAAGAGTTTGTTCAAGCACTCCTTAAGTTTCTTCAGTTAGCTGTAAAAGAAGGGAATTCCAAAGCTCAAGAAAGTGGAGCCATCGCACTCTTTAACCTGGCTGTCAACAACTGCAGAAACAAGGAAATAATGTTGAAAGCTGGGGTGATTTCATTGTTGGAGCAAATGATCTTGAACTCTGATTCCCACGAGTATGCAACAGCCCTCTATCTAAATCTTTCTTGCCTTGAAGACGCCAAGCCTATCATTGGTCTAAGCTGTGCTGTTCCTTTCTTGTGTCATCTTCTTCAAACTAATGCCAAACCCCTCTGCAAGCTTGATGCCCTCCATGCCCTTTACAATCTTTCTACTCTGCCCTCCAACATTTCTAACCTCCTCTCTGCTGGAGTCATCACTGGCCTTCAATCCCTGCTTGCAGACCCCGGTGATCATGGATGGACTGAGAAGGCCATAGCAGTCTTGATACATTTGGCGTTAACCCAGTCGGGAAAAGATGAAATGAGATCTACCACAGGCCTGATTAGTGCATTGGCAAGAATTTTGGACAGTGATGAAGGAGCAAAGGCAACAAGAGCAACCGCCCACGGAATGGGGCAAGAGTGGAGAAAATTCCATTTCGCCCTCACACAAGAAGCTGCTCTCCAAATAGGTGTCAAGAAGAAGAATGGGGAAAGCTTGGAGCTTTTTGTGGAAGAGCAAAAGTCATTCAGTTTACCAGTGGTGAGGCTGTTGTTCACCTTGTAA 1926 43.15 MCFLRLQLHGQMCKILSAMYCKVLSIFPSLEAAKSRSKSGIQALCSLHVAMEKTKNILQHWSECSKLYLAITGVSVLSKFEKARYCLADSLKRDEDIVPQSVGFQIQEIICELESIEFSLDPLEKQVGNDLIILLQQEQKFSNSIENNEVVSFHQSALRLGMISSRTALTERRALKKLVEKARTEEDKQKESIVTYLLHLMRKYSKLFWNEFSNENNSPGSTPCSPGKISPGCINQTFERQLLKHSSINFKPGNKKSGQMTIPPEELRCPISLHLMYDPVIIASGQTYERSCIDKWFNDGHSSCPKTQQKLSHLSLTPNYCVKSLIASWCEQSGVPLPDAPPESLDLNYWRLALSECESVNSRSMDRLGSCKLKGVKIIFLLKDDEESRTHMGAKEFVQALLKFLQLAVKEGNSKAQESGAIALFNLAVNNCRNKEIMLKAGVISLLEQMILNSDSHEYATALYLNLSCLEDAKPIIGLSCAVPFLCHLLQTNAKPLCKLDALHALYNLSTLPSNISNLLSAGVITGLQSLLADPGDHGWTEKAIAVLIHLALTQSGKDEMRSTTGLISALARILDSDEGAKATRATAHGMGQEWRKFHFALTQEAALQIGVKKKNGESLELFVEEQKSFSLPVVRLLFTL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40421873 40424437 - BLOR21978 Blo16g01191 72382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01191 641 SUPERFAMILY RING/U-box 258 339 - -
Blo16g01191 641 SUPERFAMILY ARM repeat 378 580 IPR016024 -
Blo16g01191 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 335 IPR013083 -
Blo16g01191 641 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 371 - -
Blo16g01191 641 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 380 583 - -
Blo16g01191 641 Pfam U-box domain 264 332 IPR003613 GO:0004842|GO:0016567
Blo16g01191 641 SMART arm_5 385 429 IPR000225 GO:0005515
Blo16g01191 641 SMART arm_5 430 469 IPR000225 GO:0005515
Blo16g01191 641 SMART arm_5 470 511 IPR000225 GO:0005515
Blo16g01191 641 Gene3D - 378 606 IPR011989 -
Blo16g01191 641 CDD RING-Ubox_PUB 267 309 IPR045210 -
Blo16g01191 641 PANTHER U BOX DOMAIN-CONTAINING 5 371 - -
Blo16g01191 641 PANTHER U BOX DOMAIN-CONTAINING 380 583 - -
Blo16g01191 641 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Blo16g01191 641 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01191 Blo-Chr16:40421873 Blo03g01130 Blo-Chr3:37761378 4.23E-49 dispersed
Blo16g01191 Blo-Chr16:40421873 Blo16g01194 Blo-Chr16:40439448 0 proximal
Blo01g00365 Blo-Chr1:4283069 Blo16g01191 Blo-Chr16:40421873 0 wgd
Blo16g01191 Blo-Chr16:40421873 Blo06g00829 Blo-Chr6:31531339 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01191 - - vvi:100256374 773.081