Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g01195 ATGAAGCTGGATACCAGTGCCTTTGAATCAGCTGCGACATCTTTTGGTGCAAACTGTGAGCTTCTTGGAGGGTTCCCAACTAACCCAGCTTTTGAAATTCCTAATACTACTGATTTTGATGGCTTTCAGAAAGATGCAATTCAGATGGTGAAGCCCGCAAAGGGGACGACCACATTAGCTTTTATTTTCAAGGAAGGAGTCATTGTTGCAGCCGATTCTCGAGCTAGCATGGGGGGGATATATATGTATTCTCTCTGTTTAGACCCTATCAAATTGCTAATTATAATTTGTTTGGTAAGTGGCCCAGGACTGTACTATGTAGACGGTGAAGGAGGTAGGCTGAAAGGAATTCGGTTCTCAGTTGGATCTGGATCCCCTTATGCATATGGTGTATTGGACAATGGGTATCGGTATGATATGTCAGTGAAAGAAGCTGCTGAATTGGCAAGAAGAGCTATCTATCATGCAACGTTCCGAGATGGCGCTAGTGTTTATTATGTTGGACCGAGTGGATGGGAAAAGCGATCTGGTGATGACGTTGGAGAACTTCATTACCACTACTATCCTGTTATGCCGACTCCAGTGGAAGAAGAAATGGTTGATGTTGCTGGGGCATGA 618 44.17 MKLDTSAFESAATSFGANCELLGGFPTNPAFEIPNTTDFDGFQKDAIQMVKPAKGTTTLAFIFKEGVIVAADSRASMGGIYMYSLCLDPIKLLIIICLVSGPGLYYVDGEGGRLKGIRFSVGSGSPYAYGVLDNGYRYDMSVKEAAELARRAIYHATFRDGASVYYVGPSGWEKRSGDDVGELHYHYYPVMPTPVEEEMVDVAGA 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 40448112 40450003 + BLOR21982 Blo16g01195 72386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g01195 205 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 29 83 - -
Blo16g01195 205 Pfam Proteasome subunit 92 163 IPR001353 GO:0005839|GO:0051603
Blo16g01195 205 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 100 204 - -
Blo16g01195 205 PANTHER PROTEASOME SUBUNIT BETA 29 83 - -
Blo16g01195 205 PANTHER PROTEASOME SUBUNIT BETA 100 204 - -
Blo16g01195 205 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 51 187 IPR029055 -
Blo16g01195 205 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 33 83 IPR029055 -
Blo16g01195 205 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 84 192 IPR029055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g01195 K02737 PSMB5; 20S proteasome subunit beta 5 [EC:3.4.25.1] - dcr:108198593 263.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00364 Blo16g01195 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00364 Blo-Chr1:4278481 Blo16g01195 Blo-Chr16:40448112 3.94E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1185 Blo01g00364 Blo16g01195 Bda01g02184 . Bpe13g00527 . . . . Cmo18g00697 . Cma18g00708 . Car18g00654 . Cpe09g00580 . . . . . . . . . . . . . . . . . Cone8ag0741 . . . . Cme10g00645 . . . . . . Bma01g00017 . . . . . . . . . . . . . . . . . Cla11g01353 Cam11g1411 Cec11g1437 Cco11g1432 Clacu11g1568 Cmu11g1388 Cre11g1809 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033931 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g01195 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0