Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00001 CAGGCTAACCGGCATACCATTATTCTGATGCAAAATTCTCAAAGCCGAGCAACTAGGACATTCATGGATTATGATTCAATAAGTCAAGCTATGGATGGTATATGTGGCTTGTACGAAAGGAAGCTCAAAGAAATAAATCCAGCTAACCGAAACATCACTTACGACATTGAAGATCTCTACAATTTCATTGACGGCCTTACTGACTTGAGTGCATTAGTTTATGATCATTCAATTCAAGCTTATTTACCATATGACCGCCAATGGATCAAACAGAGAACATTTCAACATTTGAGGAAACTGGCACAT 306 38.24 QANRHTIILMQNSQSRATRTFMDYDSISQAMDGICGLYERKLKEINPANRNITYDIEDLYNFIDGLTDLSALVYDHSIQAYLPYDRQWIKQRTFQHLRKLAH 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2000 3083 + BLOR15822 Blo17g00001 72389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00001 102 Gene3D Enhancer of rudimentary 3 102 IPR035912 -
Blo17g00001 102 PIRSF Enhancer_rudimentary 1 102 IPR000781 -
Blo17g00001 102 PANTHER ENHANCER OF RUDIMENTARY ERH 2 102 IPR000781 -
Blo17g00001 102 SUPERFAMILY ERH-like 4 101 IPR035912 -
Blo17g00001 102 Pfam Enhancer of rudimentary 4 100 IPR000781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00001 - - - csin:114280916 192.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g593 . . . . . . . . Cmo05g00349 Cmo12g00320 . Cma05g00345 . . Sed11g1137 . . Bhi04g00056 Tan02g2769 Cmetu03g0116 . Hepe10g0212 . . . . . . . . . Cone4ag1739 Cone7ag1659 . . . . . Cme03g01571 Blo17g00001 . . . . . . Bma02g00005 . . . . Cma12g00367 . Car05g00291 . . . . . . . . . Cla08g01371 Cam08g1840 Cec08g1418 Cco08g1551 Clacu08g1535 . Cre08g1318 Lsi08g01253 . Chy03g01079 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011401 0 1 1 1 0 1 1 1 0 0 1 1 2 1 1 2 1 2 0 1 0 1 1 1 0 1 1 4 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00001 Blo_Chr17 FPKM 4.137167 4.532393 3.700782 3.375489 8.240583 9.143526 9.756854 3.55859 3.507796 4.102132