Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo17g00003 | GTGTCTGACAAGGAGCATCACTTCGAATCCAAAGCCGACGCCGGTGACTCCAAGACCTACCCTCAGCAAGCCGGTACCATTCGCAAGAACGGTTTCATCGTCATCAAAAACAGCCCCTGCAAGGTTGTTGAGGTTTCGACTTCGAAGACTGGCAAGCATGGTCATGCCAAATGTCACTTTGTGGGGATTGATATTTTCACTGCAAAGAAACTCGAAGACATCGTTCCATCATCCCACAATAGTGATGTTCCCCATGTTGACCGCTTTGATTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGATTTGAGGCTTCCTAGTGACGATAGTTTACTCACTCAGATAAAAGAGGGATTTGCTGAAGGCAAGGACCTTATGACGGCAATGGGGGATGAACAAATTTGTGCTCTCAAGGACATTGGACCAAAGAAT | 468 | 45.51 | VSDKEHHFESKADAGDSKTYPQQAGTIRKNGFIVIKNSPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNSDVPHVDRFDYQLIDISEDGFVSLLTDNGNTKDDLRLPSDDSLLTQIKEGFAEGKDLMTAMGDEQICALKDIGPKN | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 16087 | 17469 | - | BLOR15824 | Blo17g00003 | 72391 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo17g00003 | 156 | Gene3D | - | 2 | 85 | IPR014722 | - | |
Blo17g00003 | 156 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 150 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo17g00003 | 156 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Blo17g00003 | 156 | SMART | eIF_5a_2 | 85 | 150 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo17g00003 | 156 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 152 | IPR012340 | - | |
Blo17g00003 | 156 | Gene3D | - | 86 | 155 | IPR012340 | - | |
Blo17g00003 | 156 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 18 | 149 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Blo17g00003 | 156 | PANTHER | BNAA07G09420D PROTEIN | 2 | 152 | - | - | |
Blo17g00003 | 156 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Blo17g00003 | 156 | PIRSF | Transl_init_eIF5A | 1 | 153 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Blo17g00003 | 156 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo17g00003 | 156 | CDD | S1_eIF5A | 86 | 152 | - | - | |
Blo17g00003 | 156 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 2 | 152 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo12g01052 | Blo17g00003 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g01418 | Blo-Chr1:52859890 | Blo17g00003 | Blo-Chr17:16087 | 3.40E-76 | wgd | |
Blo17g00003 | Blo-Chr17:16087 | Blo18g00009 | Blo-Chr18:103981 | 2.43E-88 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo17g00003 | K03263 | K02180 | tcc:18610325 | 283.108 |