Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00003 GTGTCTGACAAGGAGCATCACTTCGAATCCAAAGCCGACGCCGGTGACTCCAAGACCTACCCTCAGCAAGCCGGTACCATTCGCAAGAACGGTTTCATCGTCATCAAAAACAGCCCCTGCAAGGTTGTTGAGGTTTCGACTTCGAAGACTGGCAAGCATGGTCATGCCAAATGTCACTTTGTGGGGATTGATATTTTCACTGCAAAGAAACTCGAAGACATCGTTCCATCATCCCACAATAGTGATGTTCCCCATGTTGACCGCTTTGATTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGATTTGAGGCTTCCTAGTGACGATAGTTTACTCACTCAGATAAAAGAGGGATTTGCTGAAGGCAAGGACCTTATGACGGCAATGGGGGATGAACAAATTTGTGCTCTCAAGGACATTGGACCAAAGAAT 468 45.51 VSDKEHHFESKADAGDSKTYPQQAGTIRKNGFIVIKNSPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNSDVPHVDRFDYQLIDISEDGFVSLLTDNGNTKDDLRLPSDDSLLTQIKEGFAEGKDLMTAMGDEQICALKDIGPKN 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 16087 17469 - BLOR15824 Blo17g00003 72391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00003 156 Gene3D - 2 85 IPR014722 -
Blo17g00003 156 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 150 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo17g00003 156 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Blo17g00003 156 SMART eIF_5a_2 85 150 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo17g00003 156 SUPERFAMILY Nucleic acid-binding proteins 86 152 IPR012340 -
Blo17g00003 156 Gene3D - 86 155 IPR012340 -
Blo17g00003 156 TIGRFAM eIF_5A: translation elongation factor IF5A 18 149 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo17g00003 156 PANTHER BNAA07G09420D PROTEIN 2 152 - -
Blo17g00003 156 MobiDBLite consensus disorder prediction 1 22 - -
Blo17g00003 156 PIRSF Transl_init_eIF5A 1 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo17g00003 156 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo17g00003 156 CDD S1_eIF5A 86 152 - -
Blo17g00003 156 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 2 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g01052 Blo17g00003 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01418 Blo-Chr1:52859890 Blo17g00003 Blo-Chr17:16087 3.40E-76 wgd
Blo17g00003 Blo-Chr17:16087 Blo18g00009 Blo-Chr18:103981 2.43E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00003 K03263 K02180 tcc:18610325 283.108