Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00017 ATGTCTCCCACGGCTTCGACTTCCGGTAAGAATCTTTTGCTGCCGCTGTCGGATCAGCCCCACGGCAGCGAACAGAGGGACCGACTTCTCAAAGTCGATGAGAAGCTCTTCAAAGGATCCCCCATGACAAAGCGTGGAGCCTATGCTGCTCTCTCCTACATGTCTTGCGCGGTACTCTTAGTAATGTTTAACAAGGCAGCTCTTTCTTCTTATAGCTTTCCAAGTGCAAACGTGATTACACTCTTTCAGATTATATGCTCTACTTGTTTCCTTTATATATTGAGAAGATGGAAGATAATTTCTTTCATAGCAGCCGAGTCATTGACCATTTCTGACAATTCCTCAAAATTTGTCTCATTGAAGACTTTAAAAGGAACTCTTCCTCTTGCGGGAGCTTATTTGCTATACATGCTAGCCACAATGGAGGCAGTCCGAGGAGTAAATGTTCCCATGTACACCACCCTCAGGCGAACAACTGTGGTATTTACAATGGTTGTAGAACGACTTTTGTCGGGACAGAAGTATACATCACCTGTTGTTGGAAGTGTGGGGACGATTGTTCTCGGTGCAATAGTTGCTGGAGCTCGGGATTTGTCGTTCGATTACTATGGCTATTCACTTGTTTTCTTATCAAACGCTACAACGGCAATATATCTTGCAACCATAGCCCGTGTTGGTAGAAAATCTAGTGGTCTTAACAGCTTTGGTCTCATGTGGTGCAACGGAGTCGTATGTGGACCAGTGTTACTTGTATGGACCTATTTTTGGGGCGACTTAGATAAGATGATTAAGTTCCCTTATCTTTTGTCACCAGGCTTTATGATGGTGATGCTCTGTTCTTGCATGCTTGCTTTCTTCTTGAATTACAGCATATTTTTAAATACAACACTCAACTCAGCTCTTACGCAGACAATATGCGGTAATCTGAAGGATTTTTTCACCATTGGACTTGGGTGGATGATTTTCGGCGGACTAGCATTTGACTGGTTGAATGTAATGGGGCAATTTCTTGGATTCCTTGGCTCTGCCATGTATGCCTACTATAAGCTGATGGGAAAGAAAGCACCCTACAACCCACGAGACGCACCGTCGGGAGTTGGAGACGGAATGTTTGCCGCAGAAAATGGACTCAAGGGAGATCCAAGGCTCCACGCCATTTCTGAAGCCATTAGAGTAGTCCCTCACTTTCCTAAACCAGGAATTATGTTTCAGGACATAACAACGTTAATGCTGGATCACAAGGTGTTCAAGCACACTGTAGACATTTTCGTTGATCGTTACAGGGGCATGGGCATCTCTGTCGTTGCTGGAGTGGAAGCAAGAGGATTCATGTTCGGCCCCTCGATTGCTTTGGCTATCGGTGCCAAGTTTGTTCCTTTACGAAAACCTGGGAAGTTGCCGGGTAAAGTAATTTCAGAAGCATATGACTTGGAGTACGGAACCGATTGTTTGGAGATGCAAGTGGGAGCAATTCAACCTGGGGAACGTGCGATAGTGATCGACGATTTGGTTGCAACCGGGGGGACACTGTCAGCTGCAATTAGGCTTCTGGAACGAATGGGCGCCCAAGTCATCGAGTGTGGTTGTGTTATCGGGCTGCCTGAGTTGAAGGGGCAACGAAGAGTCAATGGAAAACCGGTGTATATCCTCGTGGAGCCCCATCGAGTTGATAGCAGATTGTAA 1683 45.81 MSPTASTSGKNLLLPLSDQPHGSEQRDRLLKVDEKLFKGSPMTKRGAYAALSYMSCAVLLVMFNKAALSSYSFPSANVITLFQIICSTCFLYILRRWKIISFIAAESLTISDNSSKFVSLKTLKGTLPLAGAYLLYMLATMEAVRGVNVPMYTTLRRTTVVFTMVVERLLSGQKYTSPVVGSVGTIVLGAIVAGARDLSFDYYGYSLVFLSNATTAIYLATIARVGRKSSGLNSFGLMWCNGVVCGPVLLVWTYFWGDLDKMIKFPYLLSPGFMMVMLCSCMLAFFLNYSIFLNTTLNSALTQTICGNLKDFFTIGLGWMIFGGLAFDWLNVMGQFLGFLGSAMYAYYKLMGKKAPYNPRDAPSGVGDGMFAAENGLKGDPRLHAISEAIRVVPHFPKPGIMFQDITTLMLDHKVFKHTVDIFVDRYRGMGISVVAGVEARGFMFGPSIALAIGAKFVPLRKPGKLPGKVISEAYDLEYGTDCLEMQVGAIQPGERAIVIDDLVATGGTLSAAIRLLERMGAQVIECGCVIGLPELKGQRRVNGKPVYILVEPHRVDSRL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 98338 103652 - BLOR15838 Blo17g00017 72405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00017 560 CDD PRTases_typeI 420 552 IPR000836 -
Blo17g00017 560 TIGRFAM apt: adenine phosphoribosyltransferase 387 552 IPR005764 GO:0003999|GO:0005737|GO:0006168
Blo17g00017 560 Hamap Adenine phosphoribosyltransferase [apt]. 386 553 IPR005764 GO:0003999|GO:0005737|GO:0006168
Blo17g00017 560 MobiDBLite consensus disorder prediction 1 25 - -
Blo17g00017 560 PANTHER BNAA08G30680D PROTEIN 15 353 - -
Blo17g00017 560 Pfam Triose-phosphate Transporter family 56 345 IPR004853 -
Blo17g00017 560 PANTHER SOLUTE CARRIER FAMILY 35 15 353 - -
Blo17g00017 560 Pfam Phosphoribosyl transferase domain 432 535 IPR000836 -
Blo17g00017 560 Gene3D - 374 553 IPR029057 -
Blo17g00017 560 SUPERFAMILY PRTase-like 389 547 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00017 K15281 SLC35D; solute carrier family 35 - jre:108985152 555.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00621 Blo-Chr1:6866756 Blo17g00017 Blo-Chr17:98338 1.37E-122 dispersed
Blo02g01051 Blo-Chr2:40500707 Blo17g00017 Blo-Chr17:98338 2.63E-21 dispersed
Blo16g00542 Blo-Chr16:22342777 Blo17g00017 Blo-Chr17:98338 8.63E-14 dispersed
Blo17g00017 Blo-Chr17:98338 Blo17g00861 Blo-Chr17:28084072 4.28E-79 dispersed
Blo17g00017 Blo-Chr17:98338 Blo18g00019 Blo-Chr18:160537 2.90E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g492 . . . . . . . . . . . . Car09g00398 . . . Cpe06g00335 . . . . . . . Cla05g01734 Cam05g1847 Cec05g1859 Cco05g1919 Clacu05g1835 Cmu05g1718 Cre05g1849 . . . Cone20ag0675 Lsi04g02123 Csa03g04330 Chy04g00371 . Blo17g00017 . . Bda13g01257 Bpe14g00583 . . Bma02g00021 Sed13g2020 . Cmo09g00461 Cma09g00453 . . . . . Bhi09g02233 Tan01g3637 Cmetu04g0377 . Hepe01g2016 Mch11g0552 . . . . . . . . . . . Cme04g00413
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo02g00658 . 70 526 PRT Gene Family AT2G16570 81.7 1.9e-217 752.3
Blo02g00660 . 1 395 PRT Gene Family AT2G16570 84.8 2.7e-195 678.7
Blo02g00658 . 71 522 PRT Gene Family AT4G34740 83.4 1.0e-218 756.5
Blo02g00660 . 1 395 PRT Gene Family AT4G34740 85.3 1.4e-196 682.9
Blo02g00658 . 70 520 PRT Gene Family AT4G38880 72.4 2.1e-186 649.0
Blo02g00660 . 1 368 PRT Gene Family AT4G38880 74.3 8.7e-156 547.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo18g00155 . 3 188 PRT Gene Family AT1G71750 61.9 6.5e-64 240.7
Blo03g01488 . 15 469 PRT Gene Family AT1G55810 82.9 3.9e-221 764.2
Blo03g00493 . 170 624 PRT Gene Family AT1G55810 83.6 8.6e-221 763.1
Blo17g00327 . 19 218 PRT Gene Family AT1G55810 59.2 2.2e-59 226.9
Blo17g00329 . 39 153 PRT Gene Family AT1G55810 84.3 1.8e-53 207.2
Blo03g00493 . 221 628 PRT Gene Family AT3G27440 76.0 2.5e-182 635.2
Blo03g01488 . 66 473 PRT Gene Family AT3G27440 73.8 2.0e-179 625.5
Blo17g00329 . 39 153 PRT Gene Family AT3G27440 77.4 3.3e-49 193.0
Blo17g00327 . 81 218 PRT Gene Family AT3G27440 70.3 2.8e-48 189.9
Blo03g01488 . 3 468 PRT Gene Family AT3G27190 74.9 1.3e-206 716.1
Blo03g00493 . 157 623 PRT Gene Family AT3G27190 73.7 1.6e-204 709.1
Blo17g00327 . 1 218 PRT Gene Family AT3G27190 77.2 1.4e-88 323.9
Blo17g00329 . 34 153 PRT Gene Family AT3G27190 84.2 9.3e-56 214.9
Blo07g01168 . 48 286 PRT Gene Family AT3G53900 75.0 1.6e-103 372.9
Blo03g00493 . 155 624 PRT Gene Family AT4G26510 83.9 1.9e-231 798.5
Blo03g01488 . 1 469 PRT Gene Family AT4G26510 83.1 3.1e-229 791.2
Blo17g00327 . 12 218 PRT Gene Family AT4G26510 63.3 1.6e-65 247.3
Blo17g00329 . 39 153 PRT Gene Family AT4G26510 86.1 6.5e-54 208.8
Blo03g01488 . 11 471 PRT Gene Family AT5G40870 74.8 1.9e-205 712.2
Blo03g00493 . 157 626 PRT Gene Family AT5G40870 73.0 2.7e-204 708.4
Blo17g00327 . 1 218 PRT Gene Family AT5G40870 78.4 6.2e-92 335.1
Blo17g00329 . 39 153 PRT Gene Family AT5G40870 87.0 1.6e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001360 2 7 2 2 2 2 3 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 3 3 2 2 2 6 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00017 Blo_Chr17 FPKM 0.121212 0.279704 0.39497 0.429552 1.467391 0.81821 1.886847 0.0 0.0 0.0