Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00018 ATGGCGCCGAGCACGCTGCGCAAAGCCATCGGAGCCGTGAAGGATCAGACGAGTATTGGGATCGCTAAGGTCTCTAGCAACTTGGCCCCGGAATTGGAAGTAGCGATTGTGAAGGCGACCAGCCATGACGACGATCCTGCGAGCGAGAAGTACATTAGAGAAATTCTGAATCTCACCTCCTACTCTCGTGGAAATGTTCACGCTTGCATTTCTTCCGTGTCGAAGCGACTGGGGAAGACCCGAGACTGGATTGTAGCTCTCAAGGCGCTCATGCTCGTCCACAGACTCTTGAACGAAGGGGACCCACTCTTCCATGAGGAGATGTTGTACGCCACCAGGAGGGGCACGAGGCTTCTCAACATGTCGGACTTTAGGGACGAGGCCCATTCGAGCTCATGGGATCATTCCGCTTTTGTCAGAACTTTCGCCATGTATTTGGATCAACGCCTTGAATTGACGTTGTTCGACAAAAAAAGAATGAGGAGGACGAGGTCTGTCGGTGATGTTGGTGAAACTGTGGGAAGAGAAGGACGCACCGATAGAGATAGGAGGCCGGTGACTCCATTAAGAGAAATGAAGCCTGATAGAATTTTTGGGAGGATGGGTCATTTGCAAAGGCTGATGGATAGGTTCCTGTCCTGTCGCCCAACAGGTTTGGCAAAGAATTGTAGAATGGTTTTAATTGCCTTGTACCCTGCAGTGAGGGAGAGTTTTCAGCTGTACGCCGATATTTGTGAGGTTTTAGCTCTGCTGCTCGATAAATTTTTCGACTGGGAATATAGTGATTGCGTTAAGGCTTTTGATGTGTACGCAACCGCAGCAAAGCAAATTGACGAGCTTGTTGCTTGCTATGTGTGGTGTAAAGATAAAGGTGTGGCAAGATCGTCAGAGTATCCGGACGTTCAGAGGATTACTAGTAAGCTGTTGGAGACATTGGAGGAGTTTATGAGGGACAGAGCAAAGAGAACCAATAGTCCGGACGTCAGGGAGGAGCCTCTTCCCGTGGCTCCAGAAGAAGAGCCCGTACAGAATATGAATGAGATAAAGGCTCTGCCTCCACCAGAGAACTATACTCCACCTCCACCTGAGCCAGTGGCCGACCCCAAGCCTCAAATTGTTGAAGATTTGGTGAATTTAAAAGATGACATTGATAGTGCAGATGATCAAGGCAATCGTCTAGCATTGGCTTTATTTGCAGGCCCACCGGCGAACAGCGCAAATGGATCATGGGGAGCTTTTCCTTCAAATGGACAGCCTGAAGTGACATCTGCGTGGCAAACTCCGGCGGCAGAACCCGGAAATGCGGATTGGGAACTTGCTTTGGTCGAGACTGCCAGCAATTTGGCGAAGCAGAAAGTAGCACTTGGTGGTGGGCTAGATCCATTGTTAGTGAACGGAATGTATGATCATGGCATTGTTAGACAGCACGCAAGCATTGCAGAACTGAGTGGTGGAAGTGCCAGCAGTGTAGCATTGCCAGGGCATGGAAAGAAGAGTAACCCAGTTTTGGCCCTTCCAGCCCCAGATGGAACAGTTCACACCTATAATCACGACCCTTTTGCTGCGTCATTAAACATACCACCTCCTTCATATGTACAAATGGCTGATATGGAGAAGAAACAAACCTTTCTTGTGCAGGAACAGCAACTATGGCTGCACTATGCCAGAGATGGAATGCGAGGCCAATCTAGCTTGACCAAAAGTAGTGGCCTAACCTATTATGGTTCCTCTCCCTCGCCGATGATGCCTTATGGGATGCCTCCTGCTAATGGTATTGGGTCGGCACATGCCACTTACTATTATGCTTCCTATTAA 1815 49.09 MAPSTLRKAIGAVKDQTSIGIAKVSSNLAPELEVAIVKATSHDDDPASEKYIREILNLTSYSRGNVHACISSVSKRLGKTRDWIVALKALMLVHRLLNEGDPLFHEEMLYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTFAMYLDQRLELTLFDKKRMRRTRSVGDVGETVGREGRTDRDRRPVTPLREMKPDRIFGRMGHLQRLMDRFLSCRPTGLAKNCRMVLIALYPAVRESFQLYADICEVLALLLDKFFDWEYSDCVKAFDVYATAAKQIDELVACYVWCKDKGVARSSEYPDVQRITSKLLETLEEFMRDRAKRTNSPDVREEPLPVAPEEEPVQNMNEIKALPPPENYTPPPPEPVADPKPQIVEDLVNLKDDIDSADDQGNRLALALFAGPPANSANGSWGAFPSNGQPEVTSAWQTPAAEPGNADWELALVETASNLAKQKVALGGGLDPLLVNGMYDHGIVRQHASIAELSGGSASSVALPGHGKKSNPVLALPAPDGTVHTYNHDPFAASLNIPPPSYVQMADMEKKQTFLVQEQQLWLHYARDGMRGQSSLTKSSGLTYYGSSPSPMMPYGMPPANGIGSAHATYYYASY 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 108722 110671 + BLOR15839 Blo17g00018 72406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00018 604 MobiDBLite consensus disorder prediction 319 336 - -
Blo17g00018 604 PANTHER - 1 158 - -
Blo17g00018 604 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Blo17g00018 604 SUPERFAMILY GAT-like domain 188 318 - -
Blo17g00018 604 PANTHER CLATHRIN ASSEMBLY PROTEIN 159 581 IPR045192 GO:0048268|GO:0072583
Blo17g00018 604 SMART enth_2 30 164 IPR013809 -
Blo17g00018 604 Gene3D - 2 156 IPR008942 -
Blo17g00018 604 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Blo17g00018 604 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 158 IPR045192 GO:0048268|GO:0072583
Blo17g00018 604 MobiDBLite consensus disorder prediction 319 340 - -
Blo17g00018 604 PANTHER - 159 581 - -
Blo17g00018 604 Pfam ANTH domain 31 318 IPR011417 GO:0005543
Blo17g00018 604 Gene3D ANTH domain 180 330 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Blo17g00018 604 CDD ANTH_N_AP180_plant 32 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00018 - - - tcc:18587782 908.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01391 Blo17g00018 CCT
Blo12g01075 Blo17g00018 CCT
Blo17g00018 Blo18g00021 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01307 Blo-Chr4:28125279 Blo17g00018 Blo-Chr17:108722 1.27E-164 dispersed
Blo08g00412 Blo-Chr8:7976815 Blo17g00018 Blo-Chr17:108722 0 dispersed
Blo13g00243 Blo-Chr13:10669352 Blo17g00018 Blo-Chr17:108722 5.02E-168 dispersed
Blo16g00841 Blo-Chr16:35408846 Blo17g00018 Blo-Chr17:108722 3.12E-74 dispersed
Blo04g01211 Blo-Chr4:22862933 Blo17g00018 Blo-Chr17:108722 1.63E-100 transposed
Blo01g01391 Blo-Chr1:52192363 Blo17g00018 Blo-Chr17:108722 0 wgd
Blo12g01075 Blo-Chr12:28477995 Blo17g00018 Blo-Chr17:108722 0 wgd
Blo17g00018 Blo-Chr17:108722 Blo18g00021 Blo-Chr18:182942 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00018 Blo_Chr17 FPKM 4.297179 4.90691 5.056109 4.788696 32.750668 36.832001 29.078497 0.600023 0.576555 0.427702