Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00020 ATGAAGATGAAGAAGTTGCAGGTGAAGGTGAACCAGTTGAAGCTCCATGGACATTCGAAAGAGGCATTTGTCAATGGAGACACGGAACCGATAGTAGCCATTCAGATGAAATGGAAAGGTCCTCCAAACTCTGCTCTTTTAAAGATTCCCTTCTATGGCAAATCAAGACTCCAGAATAATCGCACCGCTCCGATGCCTCTAAAAGACGAATCTATAGAATGGGATGATGAATTCGAAAGAATCTGTGATTTTCCGGTCGCTTCTTCCGGCGACGTTTCGCCGGGTTCCTGGCTCACTAATTTCTACGTCTTATACGGGGAGAGCTCAAAAAGTAAGGCTAAAATGAAGGTAATTGGGAAGGTCTCCCTCAACTTAGCAGAAATGGTTTCAAACGAGCAGAGCCAGAAAAAGCTTTCCATCGCTTTCAATGACGGTGGGCATGGGATAATCACGTCTCGTCAGGGTACCCTTTTGGTATGCGTTAAGTTTGCAGAAATCCGAAACTCTCAGGAATCGGCAAGAATCGCGGTTGACCCGGACGAGAACAGGTTGCTTAGGAAGGTGATGGATTTCGCGAGCTTCACAAAGAGAGAAAAGGAAAGGAATGCTCAAAACGAACGCGTATTCTACGCTTCTTTGTCCAACTCGGCGTCGTTTGACGCACCTCCGTCCCCCACCGAGTCATCGGGGATTCCGAGTTGGGCGACTCGTTCGGAGGGAATCTCCGGATTAGACTCCTCAGCCTCATCATGGAAGAAGAGGCGGTTGAGTTTTAAGCGTTCCCCTTCAAGAACGAAAGTAGAGCCGTTGATTGAGAATGAACAAGTCAACCATTTGTTGACCGTCGATTGCTCTACAGCTGGAGGTCCAAACTTATCAGAGGTAACGATCCGCTTGATTCAACGCTCGAACTTATCTGGGCGATCTTGGCAGGAAGAGCGAATTTCCAAAGGCGATGGAAACTCCATTTCAGGGAAATGGGAGAGCAAGGAAATAATAAGCAGAGATGGAGAATCAAAGCTGAGAACCAGGGTGTTCATGGGGTGTTTCGATCAGCGAAGCGAAAAGGCGGGAGGGGAAGGCGCCTGCACAGCTCTGGTTGCAGTAATTACCCATTGGCTCCATTCAAATCCGAACTCCATGCCGACAATCTCTCAATTGAATGACCTGATTATACAAGGCTCGCTGGAATGGCAAAAGCTTTGCAGCAACGATGCTTACATAAACAGGTTTCCAGACAAACACTTCGACCTCGAAACTGTCCTAGAAGCTAACGTTAGGCCGATCGCTGTCTTGCCGGGAAAATCATTCGTCGGCTTCTTTTGCCCCGAAAAGTTTGAGATGTTGAAGGAAGCCATGTCGTTTGAGCAAATATGGATTGCGATAAACAGCCAGGCCGACGACGAATGCCATTACCCGAGGATATACATAGTGGGTTGGAACGATCATTTCTTTGTGTTGAAGGTAGAAGAAGATGCTTACTACGTGATTGACTCGTTGGGCGAGCGACTGTTCGAGGGGTGCAACCAGGCGTATATGTTGAAGTTTGACAAGTCAAGTTTGATGTACGAGAAGACAGCGGAGGAAAATGAAGAAGACGACGGAGAGGTCGAAGAAAGGAAGCGTATGATTTGCCGCGGAAAAGAGTGTTGCAGAGAATTCATCAGGAGATTTCTTGCTGCAATTCCGCTTGGGAATGTGGAGGAAGAGGAGAGTAAAGGCACAAGTTCCAGTCGTTTACTCCACAACAGGTTGCAGATTGACTTCCATTACAGTATTCGCAAAGACGACTGA 1794 47.38 MKMKKLQVKVNQLKLHGHSKEAFVNGDTEPIVAIQMKWKGPPNSALLKIPFYGKSRLQNNRTAPMPLKDESIEWDDEFERICDFPVASSGDVSPGSWLTNFYVLYGESSKSKAKMKVIGKVSLNLAEMVSNEQSQKKLSIAFNDGGHGIITSRQGTLLVCVKFAEIRNSQESARIAVDPDENRLLRKVMDFASFTKREKERNAQNERVFYASLSNSASFDAPPSPTESSGIPSWATRSEGISGLDSSASSWKKRRLSFKRSPSRTKVEPLIENEQVNHLLTVDCSTAGGPNLSEVTIRLIQRSNLSGRSWQEERISKGDGNSISGKWESKEIISRDGESKLRTRVFMGCFDQRSEKAGGEGACTALVAVITHWLHSNPNSMPTISQLNDLIIQGSLEWQKLCSNDAYINRFPDKHFDLETVLEANVRPIAVLPGKSFVGFFCPEKFEMLKEAMSFEQIWIAINSQADDECHYPRIYIVGWNDHFFVLKVEEDAYYVIDSLGERLFEGCNQAYMLKFDKSSLMYEKTAEENEEDDGEVEERKRMICRGKECCREFIRRFLAAIPLGNVEEEESKGTSSSRLLHNRLQIDFHYSIRKDD 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 114645 116714 - BLOR15841 Blo17g00020 72408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00020 597 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 2 595 - -
Blo17g00020 597 MobiDBLite consensus disorder prediction 217 246 - -
Blo17g00020 597 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 37 138 IPR019448 -
Blo17g00020 597 PANTHER - 2 595 - -
Blo17g00020 597 ProSiteProfiles C2 NT-type domain profile. 1 165 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00020 - - - mcha:111004847 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00020 Blo-Chr17:114645 Blo07g00038 Blo-Chr7:647733 8.34E-58 dispersed
Blo17g00020 Blo-Chr17:114645 Blo13g00954 Blo-Chr13:31951400 2.16E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g486 . . . . . . . . Cmo05g00382 . . Cma05g00381 . . Sed03g1613 . . Bhi04g00946 Tan02g2726 Cmetu03g0210 . Hepe10g0247 . Lcy13g1793 . . . . . . . . . . . . . . Cme03g01613 Blo17g00020 . . Bda13g01261 . . . . . . . . . . Car05g00324 Cpe11g00326 . . . . . . . . Cla08g01337 Cam08g1799 Cec08g1378 Cco08g1506 Clacu08g1493 . Cre08g1280 Lsi08g01208 . Chy03g01117 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013221 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00020 Blo_Chr17 FPKM 15.556946 14.750752 16.648476 16.136789 23.401199 20.594112 21.398571 19.194195 18.090475 20.388502