Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00021 ATGGTCTGCTCCGCCGCTTCCAACTCTTCCCGATTGAGATTCGAATTTCTGTTTCCCGCCAATTCACGCTGCTGTTCTTCCTCAATGCTCGCGTTTAATTCCAAATCCTTGGTAGCCTGCTCCCTTCTCACTCCTCTTCGGGATTCAGTTCGGACTGATTCGTGCGGTTGGACGAGGCGAGCTCTCGTTTTTACTTCTCCGATGCCGTTTCTTCTCCCGTTGCCTGACTGCTTGGGGAGTTTAGCGGTGGCCACAGCAGAAACGGGAACAGGTGCTGATTTACGAATAAGGGAAGAGGTCAGGAAGGTCGTGTCCAAGGGTAAGGCTGCTGGCATTCTCCGTCTGGTATTTCACGACGCAGGAACTTTTGATATAGACGAAAATTCAGGTGGCATGAATGGTTCCATTGTTTATGAGCTTGATAGACCTGAAAATACTGGTCTCAAAAAATCTTTGAAGGTGAGCTCTGTCTCTCTCTCTCTCTTTCTTAACATGTTTCTGAAATGTTCTTTGGCAGCTTCATGGGCAGATATGATTGCAATCGCTGGTGCAGAAGCAGTTTCAATCTGTGGGGGTCCAAACATCCCTGTTGGGACAGGCAGATTAGATTCATTGGAGGCTGATCCTGAAGGGAAACTTCCTGGAGAGTCTATGGATGCTTTGGGCTTGAAGCGATGCTTTCTGAAGAAAGGATTTTCAACGCGAGAACTGGTTGCTCTGTCTGGAGCCCACACTCTCGGGAGCAAGGGATTTGGAAACCCAACAGTGTTTGATGCTTCCTACTTTCAGATTCTTCTGGAGAAGCCGTGGAAGTCTCCAGCTGGTGGTATGACAAGCAGCATGATTGGGCTTCCTTCCGACCGCGCTCTCTCCGAGGACGAAGAGTGCACAAGATGGATCAGAAAGTATGCAGACGATCAGACGATGTTCTTTCAAGATTTCAAGAAGGCTTACATCAAGTTGGTGAACTCTGGCGCTGAACCCCACGACTTCCATCCCCCTTCACTTCCACCAAACCCATCTCTGCTCTGCAGCATGTCGTCCATTATCGTTGAAGATTATATCCACGTTTTCTCCGATGGGACTGTCTCCCGTTTTACGCCGGAGATTGTTCCTGCGTCCGCAGAGTCGGGGATAGGATATAAGACTAAGGACGTGATCATTGATTCATCGAAAGCTATCACCGGACGGGGACTGATGCTGATACATCCATATTTCGGAAGCGAGAAGCGGACCAAGGAAGAGGAAGACGGTGAGAAGGCGGCTAACGTAGCCATGAACGACATGTTTTGGAAGCTGAGCATACCAGAAGGGTCAGACAGAGACTACTACGGGTGTAACTTCGAGAAAGACGAACAACTTGGGAAAATAGAATGGGATGCGGTTCCAAAAGTGGTGGTGTTCGTTGCTGGGTTGGATTTCTTGAAGGAAAGAGGAGTGTTATACGCAGAGTATATGGAGAAGAAAATGGGGCAGAAGAAGGTGAAGCTGGTGGAGGCGGAGGGAGAGGCGCACGTGTTCCACGTGTTTAATCCAGAATCTGAAGCCACCCGAGCTCTGCAACAGCAGATGAAGGAGTTCATGGAGAAGACGGATTAA 1599 49.09 MVCSAASNSSRLRFEFLFPANSRCCSSSMLAFNSKSLVACSLLTPLRDSVRTDSCGWTRRALVFTSPMPFLLPLPDCLGSLAVATAETGTGADLRIREEVRKVVSKGKAAGILRLVFHDAGTFDIDENSGGMNGSIVYELDRPENTGLKKSLKVSSVSLSLFLNMFLKCSLAASWADMIAIAGAEAVSICGGPNIPVGTGRLDSLEADPEGKLPGESMDALGLKRCFLKKGFSTRELVALSGAHTLGSKGFGNPTVFDASYFQILLEKPWKSPAGGMTSSMIGLPSDRALSEDEECTRWIRKYADDQTMFFQDFKKAYIKLVNSGAEPHDFHPPSLPPNPSLLCSMSSIIVEDYIHVFSDGTVSRFTPEIVPASAESGIGYKTKDVIIDSSKAITGRGLMLIHPYFGSEKRTKEEEDGEKAANVAMNDMFWKLSIPEGSDRDYYGCNFEKDEQLGKIEWDAVPKVVVFVAGLDFLKERGVLYAEYMEKKMGQKKVKLVEAEGEAHVFHVFNPESEATRALQQQMKEFMEKTD 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 123473 126914 + BLOR15842 Blo17g00021 72409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00021 532 Pfam Peroxidase 97 306 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 10 326 - -
Blo17g00021 532 SUPERFAMILY alpha/beta-Hydrolases 420 530 IPR029058 -
Blo17g00021 532 Gene3D - 97 325 - -
Blo17g00021 532 Gene3D alpha/beta hydrolase 386 530 IPR029058 -
Blo17g00021 532 SUPERFAMILY Heme-dependent peroxidases 95 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Haem peroxidase superfamily signature 109 123 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Haem peroxidase superfamily signature 173 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Haem peroxidase superfamily signature 191 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Plant ascorbate peroxidase signature 127 137 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Plant ascorbate peroxidase signature 109 124 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Plant ascorbate peroxidase signature 212 229 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Plant ascorbate peroxidase signature 302 326 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 PRINTS Plant ascorbate peroxidase signature 230 251 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 ProSiteProfiles Plant heme peroxidase family profile. 109 348 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo17g00021 532 Gene3D Peroxidase, domain 2 214 318 - -
Blo17g00021 532 Pfam alpha/beta hydrolase fold 396 508 IPR013094 GO:0016787
Blo17g00021 532 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 10 326 IPR044831 GO:0004601|GO:0034599
Blo17g00021 532 ProSitePatterns Peroxidases active site signature. 109 120 IPR019794 GO:0004601
Blo17g00021 532 ProSitePatterns Peroxidases proximal heme-ligand signature. 236 246 IPR019793 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00021 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - pvy:116138091 357.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00021 Blo-Chr17:123473 Blo18g00181 Blo-Chr18:1722069 3.97E-26 dispersed
Blo17g00173 Blo-Chr17:1764154 Blo17g00021 Blo-Chr17:123473 2.67E-08 dispersed
Blo17g00174 Blo-Chr17:1766076 Blo17g00021 Blo-Chr17:123473 2.54E-12 dispersed
Blo17g00021 Blo-Chr17:123473 Blo04g00564 Blo-Chr4:4853899 1.79E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00021 Blo_Chr17 FPKM 0.0 0.441387 0.0 0.08553 0.538932 0.270823 0.456582 0.350041 0.295959 0.234772