Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo17g00022 | ATGGGAGAGACCAGGGACGCCGAGTACGAGGACGAGCTTGTCGACTACGAAGATGAGGAATACAAGGCATCCGACACTGTTGGAGCCAAAGTCAATGGCGAAGCGGCAAAGAAGGGTTATGTCGGCATTCATAGTTCGGGATTCAGGGACTTTCTTTTGAAGCCAGAGCTTCTCCGTGCTATTGTGGACTCGGGATTTGAGCATCCTTCCGAAGGCAAACTTTTTACTCTTTTGTTTGACTCTTTACTTGCGTATCTAGAAACAAGGGGAAGATTATTGCAACATGAATGTATTCCCCAAGCTATTCTAGGCATGGATGTACTTTGTCAAGCTAAATCTGGGATGGGAAAAACTGCTGTTTTTGTATTATCCATCTTGCAGCAAATTGACCCTGTGGCGGGTCAAGTTTCTGCTCTTGTTCTTTGTCATACAAGAGAACTAGCATACCAGATTTGCCATGAGTTCGAGAGGTTCAGTTCTTACTTGTCAGATCTCAAAGTATCGGTATTCTATGGTGGTGTCAATATCCGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATATTGGCTTTGGCGAGAGAAAAGGATCTTTCTCTTAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTCGAATCACTTGACATGAGGAGGGATGTGCAGGAGATTTTCAAGATGACCCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTGAGCAAAGAAATTCGTCCGGTCTGCCATAAATTTATGCAAGATGTAATCAAGGAGACAAAAGAGTTGGACCACAGTCTTTACTCAATGGATGACTGTCCTCATTCATTGCTTCTGGAGTCGATTAACTTGAAGAAGGTTCCTAATACAATTTACTGTGACATTTCTTCCTTTCAGCCAATGGAAATATATGTGGATGACGAGGCAAAGTTGACCCTGCATGGTCTTGTGCAGCACTACATCAAATTGGCCGAAGCTGAGAAAAATCGCAAGTTGAATGACCTTCTCGATGCTCTGGACTTCAATCAAGTGGTTATATTCGTCAAAAGTGTGAGCAGAGCAGCTCAGTTGGATAAGTTATTGGTGGAATGTAATTTTCCCTCTATATGCATTCACTCTGGCATGTCTCAGGAAGAAAGGTTGATGCGTTACAAAGGATTCAAGGAGGGACATAAGAGGATTCTTGTGGCTACAGATTTGGTCGGCCGGGGTATTGACATTGAACGTGTGAACATAGTTATCAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTAGGTAGAGCTGGAAGGTTTGGTACTAAAGGGCTTGCCATTACTTTTGTTTCATCTGCTGCAGACACTGACGTTCTCAATAATGTTCAAGAAAGGTTTGCCGTGAATATAATGGAACTTCCTGAGCAGATTGATACTTCTACTTACAGTATGCGCTTATGTTTATCTTTAGCTATTGTTGTTAGTTTAAGTCTACTAGGTGATAATATGTCACATTACTGA | 1542 | 41.83 | MGETRDAEYEDELVDYEDEEYKASDTVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLFTLLFDSLLAYLETRGRLLQHECIPQAILGMDVLCQAKSGMGKTAVFVLSILQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDVIKETKELDHSLYSMDDCPHSLLLESINLKKVPNTIYCDISSFQPMEIYVDDEAKLTLHGLVQHYIKLAEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAQLDKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADTDVLNNVQERFAVNIMELPEQIDTSTYSMRLCLSLAIVVSLSLLGDNMSHY | 513 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 127366 | 130871 | + | BLOR15843 | Blo17g00022 | 72410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo17g00022 | 513 | CDD | DEADc_DDX39 | 45 | 267 | - | - | |
Blo17g00022 | 513 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 136 | 459 | IPR027417 | - | |
Blo17g00022 | 513 | Pfam | DEAD/DEAH box helicase | 93 | 257 | IPR011545 | GO:0003676|GO:0005524 | |
Blo17g00022 | 513 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 343 | 488 | IPR001650 | - | |
Blo17g00022 | 513 | Gene3D | - | 34 | 270 | IPR027417 | - | |
Blo17g00022 | 513 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 27 | 271 | - | - | |
Blo17g00022 | 513 | SMART | helicmild6 | 367 | 448 | IPR001650 | - | |
Blo17g00022 | 513 | CDD | SF2_C_DEAD | 328 | 457 | - | - | |
Blo17g00022 | 513 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 271 | IPR014001 | - | |
Blo17g00022 | 513 | Gene3D | - | 324 | 492 | IPR027417 | - | |
Blo17g00022 | 513 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 308 | 487 | - | - | |
Blo17g00022 | 513 | Pfam | Helicase conserved C-terminal domain | 341 | 448 | IPR001650 | - | |
Blo17g00022 | 513 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 | 27 | 271 | - | - | |
Blo17g00022 | 513 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 | 308 | 487 | - | - | |
Blo17g00022 | 513 | SMART | ultradead3 | 86 | 278 | IPR014001 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo01g01383 | Blo17g00022 | CCT | |
Blo12g01079 | Blo17g00022 | CCT | |
Blo01g01383 | Blo17g00022 | ECH | |
Blo12g01079 | Blo17g00022 | ECH | |
Blo17g00022 | Blo18g00029 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo17g00022 | Blo-Chr17:127366 | Blo18g00276 | Blo-Chr18:2930723 | 2.81E-63 | dispersed | |
Blo01g01384 | Blo-Chr1:52122289 | Blo17g00022 | Blo-Chr17:127366 | 2.71E-34 | transposed | |
Blo18g00029 | Blo-Chr18:213883 | Blo17g00022 | Blo-Chr17:127366 | 8.84E-122 | transposed | |
Blo01g01383 | Blo-Chr1:52119211 | Blo17g00022 | Blo-Chr17:127366 | 0 | wgd | |
Blo12g01079 | Blo-Chr12:28496511 | Blo17g00022 | Blo-Chr17:127366 | 0 | wgd | |
Blo17g00022 | Blo-Chr17:127366 | Blo18g00028 | Blo-Chr18:211468 | 1.69E-173 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo17g00022 | K12812 | - | csv:101217346 | 754.207 |