Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00022 ATGGGAGAGACCAGGGACGCCGAGTACGAGGACGAGCTTGTCGACTACGAAGATGAGGAATACAAGGCATCCGACACTGTTGGAGCCAAAGTCAATGGCGAAGCGGCAAAGAAGGGTTATGTCGGCATTCATAGTTCGGGATTCAGGGACTTTCTTTTGAAGCCAGAGCTTCTCCGTGCTATTGTGGACTCGGGATTTGAGCATCCTTCCGAAGGCAAACTTTTTACTCTTTTGTTTGACTCTTTACTTGCGTATCTAGAAACAAGGGGAAGATTATTGCAACATGAATGTATTCCCCAAGCTATTCTAGGCATGGATGTACTTTGTCAAGCTAAATCTGGGATGGGAAAAACTGCTGTTTTTGTATTATCCATCTTGCAGCAAATTGACCCTGTGGCGGGTCAAGTTTCTGCTCTTGTTCTTTGTCATACAAGAGAACTAGCATACCAGATTTGCCATGAGTTCGAGAGGTTCAGTTCTTACTTGTCAGATCTCAAAGTATCGGTATTCTATGGTGGTGTCAATATCCGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATATTGGCTTTGGCGAGAGAAAAGGATCTTTCTCTTAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTCGAATCACTTGACATGAGGAGGGATGTGCAGGAGATTTTCAAGATGACCCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTGAGCAAAGAAATTCGTCCGGTCTGCCATAAATTTATGCAAGATGTAATCAAGGAGACAAAAGAGTTGGACCACAGTCTTTACTCAATGGATGACTGTCCTCATTCATTGCTTCTGGAGTCGATTAACTTGAAGAAGGTTCCTAATACAATTTACTGTGACATTTCTTCCTTTCAGCCAATGGAAATATATGTGGATGACGAGGCAAAGTTGACCCTGCATGGTCTTGTGCAGCACTACATCAAATTGGCCGAAGCTGAGAAAAATCGCAAGTTGAATGACCTTCTCGATGCTCTGGACTTCAATCAAGTGGTTATATTCGTCAAAAGTGTGAGCAGAGCAGCTCAGTTGGATAAGTTATTGGTGGAATGTAATTTTCCCTCTATATGCATTCACTCTGGCATGTCTCAGGAAGAAAGGTTGATGCGTTACAAAGGATTCAAGGAGGGACATAAGAGGATTCTTGTGGCTACAGATTTGGTCGGCCGGGGTATTGACATTGAACGTGTGAACATAGTTATCAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTAGGTAGAGCTGGAAGGTTTGGTACTAAAGGGCTTGCCATTACTTTTGTTTCATCTGCTGCAGACACTGACGTTCTCAATAATGTTCAAGAAAGGTTTGCCGTGAATATAATGGAACTTCCTGAGCAGATTGATACTTCTACTTACAGTATGCGCTTATGTTTATCTTTAGCTATTGTTGTTAGTTTAAGTCTACTAGGTGATAATATGTCACATTACTGA 1542 41.83 MGETRDAEYEDELVDYEDEEYKASDTVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLFTLLFDSLLAYLETRGRLLQHECIPQAILGMDVLCQAKSGMGKTAVFVLSILQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDVIKETKELDHSLYSMDDCPHSLLLESINLKKVPNTIYCDISSFQPMEIYVDDEAKLTLHGLVQHYIKLAEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAQLDKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADTDVLNNVQERFAVNIMELPEQIDTSTYSMRLCLSLAIVVSLSLLGDNMSHY 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 127366 130871 + BLOR15843 Blo17g00022 72410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00022 513 CDD DEADc_DDX39 45 267 - -
Blo17g00022 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 459 IPR027417 -
Blo17g00022 513 Pfam DEAD/DEAH box helicase 93 257 IPR011545 GO:0003676|GO:0005524
Blo17g00022 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 488 IPR001650 -
Blo17g00022 513 Gene3D - 34 270 IPR027417 -
Blo17g00022 513 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 271 - -
Blo17g00022 513 SMART helicmild6 367 448 IPR001650 -
Blo17g00022 513 CDD SF2_C_DEAD 328 457 - -
Blo17g00022 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 271 IPR014001 -
Blo17g00022 513 Gene3D - 324 492 IPR027417 -
Blo17g00022 513 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 308 487 - -
Blo17g00022 513 Pfam Helicase conserved C-terminal domain 341 448 IPR001650 -
Blo17g00022 513 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 271 - -
Blo17g00022 513 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 308 487 - -
Blo17g00022 513 SMART ultradead3 86 278 IPR014001 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01383 Blo17g00022 CCT
Blo12g01079 Blo17g00022 CCT
Blo01g01383 Blo17g00022 ECH
Blo12g01079 Blo17g00022 ECH
Blo17g00022 Blo18g00029 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00022 Blo-Chr17:127366 Blo18g00276 Blo-Chr18:2930723 2.81E-63 dispersed
Blo01g01384 Blo-Chr1:52122289 Blo17g00022 Blo-Chr17:127366 2.71E-34 transposed
Blo18g00029 Blo-Chr18:213883 Blo17g00022 Blo-Chr17:127366 8.84E-122 transposed
Blo01g01383 Blo-Chr1:52119211 Blo17g00022 Blo-Chr17:127366 0 wgd
Blo12g01079 Blo-Chr12:28496511 Blo17g00022 Blo-Chr17:127366 0 wgd
Blo17g00022 Blo-Chr17:127366 Blo18g00028 Blo-Chr18:211468 1.69E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00022 K12812 - csv:101217346 754.207