Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00041 ATGGAGGATAGACGTCCTCTAAAGGCATTGACGGACGAAGGTTTCTGCCCATTGGATGAATGGACAAATGTTCTTCAATATGAATGGATGACCAGGATGAAGGATGGGCATATGTGGCAGCACCGCCCTATAAAGGCCAGGAATAACCCAAGTGTGGGTCCGACCTATATCAGTGGGGATAGATTGGAAGATTTGATTGTTGTTCCAACAGTGATATGGTCGTGGCCTGTTTTTGATAAAACGAGATGGGAACGCATACCAATTGAGGAAGTTTTTGAGCAGTTAAAATGCTCACGAGAAGGTTTAACGACAGGGGAAGGAGACAACCGGCTTCAAGTCTTTGGACCCAACAAATTAGAAGAGAAGAAGGAGAGCAAAATTCTCAAGTTTCTAGGCTTCATGTGGAATCCTTTATCTTGGGTCATGGAAGCTGCAGCTCTGATGGCTATAGCGCTTGCCAATGGCGATGGCAGACCTCCGGACTGGCAAGATTTTGTAGGAATCATTGTTCTACTTCTTATAAACTCTACTATCAGTTTCATTGAAGAAAACAATGCTGGGAATGCTGCAGCAGCCTTGATGGCAGGTCTTGCACCAAAAACTAAGGTTCTTAGAGATGGACGCTGGAGTGAGCAAGATGCGGCCATTCTTGTCCCAGGAGATGTAATTAGCATCAAGCTTGGAGATATAATTCCGGCCGATGCCCGACTTCTCGAGGGCGATCCTCTGAAAATCGATCAATCTGCTCTGACCGGAGAATCCCTTCCTGTCACTAAGAATCCATCAGATGAAGTATTTTCCGGCTCAACATGCAAACAAGGTGAAATTGAAGCAGTTGTGATTGCCACAGGTGTGCACACCTTCTTTGGCAAAGCTGCCCACTTGGTCGACAGCACCAATCAAGTTGGGCATTTCCAGAAAGTTCTTACCGCCATTGGTAACTTCTGTATTTGCTCCATTGCTGTTGGAATAGCAATTGAGATCATAGTGATGTACCCTATACAGAGGCGTAAATACAGGGACGGAATCGACAATTTGCTAGTTCTCTTGATTGGTGGAATCCCTATTGCCATGCCCACTGTCTTGTCTGTCACCATGGCTATTGGCTCTCACAGACTCTCTCAGCAAGGCGCTATTACGAAAAGAATGACTGCCATCGAGGAAATGGCGGGCATGGATGTCCTTTGTAGTGACAAGACAGGAACTCTAACCTTAAACAAGTTAACTGTCGATAGCAGCTTGATCGAAGTGTTTACGAAAGGTGTCGAAAAAGATTATGTGATTCTTTTGGCAGCAAGAGCTTCTAGGACTGAAAATCAAGATGCCATTGATGCTGCCATAGTCGGAATGCTTGCAGATCCCAAAGAGGCCCGAGCCGACATTAAGGAGGTTCATTTTCTTCCTTTCAATCCCGTCGATAAGAGGACTGCACTAACATACATTGACTCGGATGGAAATTGGCACCGAGCTAGCAAAGGAGCTCCTGAACAGATTCTAGATCTTTGCAACTGCAAGGAAGATGTTAGACAAAAGGTTCATGCAGTGATCGATAAGTTTGCGGAGCGCGGACTTCGATCTTTAGCCGTTGCAAGACAGGAAGTGCCTGAGAGATCAAAAGATGGTTCTGGGGCTCCATGGCAGTTTGTTGGTGTATTGTCTCTATTTGATCCTCCGAGACATGACAGTGCCGAAACGATTAGAAGAGCTCTGAATCTCGGAGTGAATGTCAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAGACCGGCCGACGTCTCGGAATGGGCACTAACATGTATCCTTCATCTTCATTACTCGGTCAAGACAAGGATACATCCATTGCCGCCCTTCCTGTGGATGAGCTGATCGAAAAGGCCGATGGGTTTGCCGGAGTATTTCCAGAGCACAAATATGAAATTGTCAAAAGGCTACAAGATAGGAAACACATTTGTGGAATGACGGGAGACGGTGTTAACGATGCACCAGCGCTGAAAAGGGCCGACATCGGAATTGCTGTTGCCGATGCTACTGATGCAGCTAGGAGTGCATCGGACATTGTCCTCACCGAGCCAGGACTGAGTGTTATTGTCAGTGCGGTGCTAACCAGCAGGGCTATTTTCCAAAGGATGAAGAACTACACTATCTACGCGGTTTCTATCACCATTCGTATAGTGTTTGGTTTTATGTTCATCGCTTTGATTTGGAAGTTTGACTTTGCACCCTTCATGGTTTTAATCATAGCCATTCTAAACGATGGAACAATCATGACGATTTCGAAAGATCGCGTTAAGCCATCTCCGCAGCCCGACAGTTGGAAATTGAAAGAGATTTTCGCCACAGGAATTGTGCTGGGTGGATACTTAGCAATAATGACTGTCGTATTCTTTTGGGCTATGAACTCTACCGACTTCTTTCCCGACAAGTTCAAAGTCAGATCAATTAGGGATAGCAACGATGAAAAGATGGCGGCATTATACCTGCAAGTGAGCATTGTGAGTCAGGCACTTATTTTCGTGACGAGATCTCGCAGCTGGTCCTACGCTGAACGTCCGGGACTTCTTTTAGTCGGTGCTTTCATAATTGCTCAGCTGGTGGCAACTCTAATAGCGGTGTATGCGCATTGGGGGTTTGCTCGAATAAAAGGAATGGGGTGGGGCTGGGCTGGTGTGATCTGGCTTTACAGCGTGGTCACGTATATACCGCTCGATTTTCTGAAATTCGCGATTCGTTATGTGCTGAGTGGGAGGGCTTGGGACACTCTTCTGGAGAAAAAGACTGCCTTCACGTCAAAGAAAGACTATGGCAAAGAGGATAGGCAAGCACAATGGGCGGCTGCCCAAAGAACCTTACACGGCCTTCAGCCTGCTACCCCCTCTACTGACAAAAGTAGTTATAGGGAGCTTTCCGAGATTGCCGAGCAAGCCAAGCGCCGAGCTGAAGTTGCAAAGCTCCGAGAATTGAATACGCTCAAGGGCCACGTCGAATCAGTCGTAAAGCTTAAAGGATTGGATATCGATACAATTCAACAACACTACACAGTCTAA 3048 46.42 MEDRRPLKALTDEGFCPLDEWTNVLQYEWMTRMKDGHMWQHRPIKARNNPSVGPTYISGDRLEDLIVVPTVIWSWPVFDKTRWERIPIEEVFEQLKCSREGLTTGEGDNRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANGDGRPPDWQDFVGIIVLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQDAAILVPGDVISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIAIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDSSLIEVFTKGVEKDYVILLAARASRTENQDAIDAAIVGMLADPKEARADIKEVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQILDLCNCKEDVRQKVHAVIDKFAERGLRSLAVARQEVPERSKDGSGAPWQFVGVLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDTSIAALPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLAIMTVVFFWAMNSTDFFPDKFKVRSIRDSNDEKMAALYLQVSIVSQALIFVTRSRSWSYAERPGLLLVGAFIIAQLVATLIAVYAHWGFARIKGMGWGWAGVIWLYSVVTYIPLDFLKFAIRYVLSGRAWDTLLEKKTAFTSKKDYGKEDRQAQWAAAQRTLHGLQPATPSTDKSSYRELSEIAEQAKRRAEVAKLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 264703 272296 + BLOR15862 Blo17g00041 72429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00041 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 81 914 IPR023298 -
Blo17g00041 1015 PRINTS H+-transporting ATPase (proton pump) signature 686 711 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 PRINTS H+-transporting ATPase (proton pump) signature 827 848 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 PRINTS H+-transporting ATPase (proton pump) signature 627 643 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 PRINTS H+-transporting ATPase (proton pump) signature 655 671 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 PRINTS H+-transporting ATPase (proton pump) signature 512 530 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 Coils Coil 966 986 - -
Blo17g00041 1015 Pfam E1-E2 ATPase 198 375 - -
Blo17g00041 1015 PANTHER PLASMA MEMBRANE ATPASE 83 995 - -
Blo17g00041 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 630 745 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 168 413 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00041 1015 Gene3D - 161 882 - -
Blo17g00041 1015 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Blo17g00041 1015 PRINTS P-type cation-transporting ATPase superfamily signature 246 260 - -
Blo17g00041 1015 PRINTS P-type cation-transporting ATPase superfamily signature 550 561 - -
Blo17g00041 1015 PRINTS P-type cation-transporting ATPase superfamily signature 572 582 - -
Blo17g00041 1015 PRINTS P-type cation-transporting ATPase superfamily signature 678 690 - -
Blo17g00041 1015 PRINTS P-type cation-transporting ATPase superfamily signature 655 674 - -
Blo17g00041 1015 SMART Cation_ATPase_N_a_2 82 154 IPR004014 -
Blo17g00041 1015 Gene3D - 408 555 IPR023299 GO:0000166
Blo17g00041 1015 SFLD Haloacid Dehalogenase 378 707 - -
Blo17g00041 1015 Pfam Cation transporter/ATPase, N-terminus 83 148 IPR004014 -
Blo17g00041 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Blo17g00041 1015 SUPERFAMILY Calcium ATPase, transduction domain A 199 296 IPR008250 -
Blo17g00041 1015 SFLD p-type atpase 378 707 IPR044492 -
Blo17g00041 1015 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 101 873 IPR006534 GO:0008553|GO:0016021|GO:0120029
Blo17g00041 1015 SUPERFAMILY HAD-like 392 702 IPR036412 -
Blo17g00041 1015 Gene3D - 964 1015 - -
Blo17g00041 1015 Pfam haloacid dehalogenase-like hydrolase 392 669 - -
Blo17g00041 1015 CDD P-type_ATPase_H 101 908 IPR006534 GO:0008553|GO:0016021|GO:0120029
Blo17g00041 1015 PANTHER CALCIUM-TRANSPORTING ATPASE 83 995 - -
Blo17g00041 1015 Gene3D - 199 283 - -
Blo17g00041 1015 Gene3D - 393 692 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00851 Blo-Chr16:35845816 Blo17g00041 Blo-Chr17:264703 0 dispersed
Blo17g00041 Blo-Chr17:264703 Blo18g00060 Blo-Chr18:424495 0 dispersed
Blo17g00041 Blo-Chr17:264703 Blo17g00048 Blo-Chr17:307230 0 proximal
Blo01g01343 Blo-Chr1:51066099 Blo17g00041 Blo-Chr17:264703 0 wgd
Blo12g01100 Blo-Chr12:28687658 Blo17g00041 Blo-Chr17:264703 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00041 K01535 - vvi:100254244 1657.88