Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00044 ATGGATGAATATTCTGGAAAAAGGGCTACTGATGGACCTGCGGCAAGAAAATCGCCTGGTCTAGTTCTGAAAGATGCAGCCAAGTGTGGCTATCAACGTTCCCAGGATTGCAGTAGGCTCAGTTGTAGTAGCAGATCAACCTCTTCAAAAGATCCTAAAGTGAGCTTTTCGGGGAAGACTAAGTCTACGAAAACTTCTTTCAATGGGAAAGAAATAGTTGGAAGTTCTTCAAGGACGACTTCTACAATTGGAAATTCCAAAAAGTCAATCGTTGAGAGTCGAAGAAAGCTGACTTCTCAATCTAGATCGGAAGCTCCAGGAAATGGCGGCATCGAGGATGAAAAAGATGGTTCTGATCCCGTCCCTCCTGGAAAAATTCGAAGAGGGCTTTATGTTCATTCTAAAAACCGTGATTTCATGGATGTTGGAAGCTCTAGTTCAGCATCAAACTCAGGATCTTCTGTTTCTACGGGAGCTACTAATCCGAGCGTAGCCTCCGGGGCTGGTCCAAATCGCTATGGTTTGAGAAACTTAAAATGCAATTCATTGTCTGACCTTATTCCATCAGGCTGTTCATCAAATAGAAATCACAATGGAACAAAGGGTATTGTGAGGAAGACAAATTCTGAAAGAGAAAGTAGCTCCATTTCTAGAGAAAAGAAGATGAATGGATCACTACCGGATGGACGGAATATCAACTCTGGCCATAGCCTATCTATTTCTGATTCGAGGAGAACCAGAAGTACACCACCTCAAACCCAAAATGGTGGGTCATCAGCTCCGTCTAGGAGTTCAGTCAATGCGAATACCAGAACTAGGCTGTCTATGGAACCATTGCATGAGTCCTCGGCCATTGGCCGCCCAATGACTCAACGGAACATAACCATCAATGGAAATGCTCTAAGTTCATCAACCCAAATCTCAACAGAACCGACCTCTAGGCGACCATTTTTCTCTACAAGAGTAAGAAATGGCAATGGGAATAGCATTGGACCTACCAGTCCTGTCGAACTCGGCTCAGTTATTACTTTGGAAAACTTGCATCGTTATAACATTGATGAATTGTTTGAGGAATTGTCGGACCTTGAGAGTGTTGAACAAGATGAAGAGCTATCATATGAGCAATTAATGCTTCTCGATGCTAGACTATTCTTAAACGCCATAAACTTCTATGATCAGCATAGAGACATGAGACTGGACATTGACGACATGTCCTATGAGGAACTGCTGGCTCTAGAAGAGAGAATGGGAAATGTCAGCACAGCACTGACTGAAGAAGCGTTGTCTCAGTGTCTCACAAGAAGTATTTTCGACTCGAACAATTATGAAGTTAGATGCTGCAGTGGTGATAAAAACGATGTAAAATGTTGTATCTGCCAGGAAGAATATGCAAATGGAGATGAAGTTGGGAGGTTGGAATGTAAGCATTGGTTTCATGAAGGATGTATACAACAATGGCTGAGGCAGAAGAACTGGTGCCCCATCTGCAAAGCTTCGGTGGAGCCCGAGCTCCCTGGCCGGCCATCTTCGCCTTCCTAG 1539 43.73 MDEYSGKRATDGPAARKSPGLVLKDAAKCGYQRSQDCSRLSCSSRSTSSKDPKVSFSGKTKSTKTSFNGKEIVGSSSRTTSTIGNSKKSIVESRRKLTSQSRSEAPGNGGIEDEKDGSDPVPPGKIRRGLYVHSKNRDFMDVGSSSSASNSGSSVSTGATNPSVASGAGPNRYGLRNLKCNSLSDLIPSGCSSNRNHNGTKGIVRKTNSERESSSISREKKMNGSLPDGRNINSGHSLSISDSRRTRSTPPQTQNGGSSAPSRSSVNANTRTRLSMEPLHESSAIGRPMTQRNITINGNALSSSTQISTEPTSRRPFFSTRVRNGNGNSIGPTSPVELGSVITLENLHRYNIDELFEELSDLESVEQDEELSYEQLMLLDARLFLNAINFYDQHRDMRLDIDDMSYEELLALEERMGNVSTALTEEALSQCLTRSIFDSNNYEVRCCSGDKNDVKCCICQEEYANGDEVGRLECKHWFHEGCIQQWLRQKNWCPICKASVEPELPGRPSSPS 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 288819 290823 - BLOR15865 Blo17g00044 72432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00044 512 SMART ring_2 456 496 IPR001841 -
Blo17g00044 512 MobiDBLite consensus disorder prediction 286 332 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 34 88 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 187 332 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 108 122 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 1 171 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 139 167 - -
Blo17g00044 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 504 IPR013083 -
Blo17g00044 512 CDD RING-H2_TTC3 455 497 - -
Blo17g00044 512 Pfam Ring finger domain 455 497 IPR001841 -
Blo17g00044 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 501 IPR045191 GO:0061630
Blo17g00044 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 501 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 187 203 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 204 218 - -
Blo17g00044 512 SUPERFAMILY RING/U-box 450 505 - -
Blo17g00044 512 MobiDBLite consensus disorder prediction 227 277 - -
Blo17g00044 512 ProSiteProfiles Zinc finger RING-type profile. 456 497 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00044 - - - rcn:112169938 402.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01341 Blo17g00044 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00044 Blo-Chr17:288819 Blo17g00874 Blo-Chr17:28800371 2.77E-37 dispersed
Blo13g00184 Blo-Chr13:7340468 Blo17g00044 Blo-Chr17:288819 4.12E-27 transposed
Blo18g00610 Blo-Chr18:9798525 Blo17g00044 Blo-Chr17:288819 1.07E-11 transposed
Blo01g01341 Blo-Chr1:51038022 Blo17g00044 Blo-Chr17:288819 2.05E-76 wgd
Blo17g00044 Blo-Chr17:288819 Blo18g00057 Blo-Chr18:390964 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00044 Blo_Chr17 FPKM 20.030487 21.345369 36.986107 37.195293 27.743584 25.222046 29.155735 54.529034 55.493843 60.125759