Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00052 ATGGAATGGAGAAAGTGCTATTTGGACGTGACACTGGTGCCTTTAGGGTTTCTGATAAACGTTGTTTATCATGCATGGTTATGGCATAAGGTTAAGACTCAGCCTCTCACAACCATCATTGGAATCAATAGGAGTGGAAGACGGTTTTGGGTCTCTGCCATTATGAAGGATAATGACAAGAAGAACATTTTAGCCGTTCAAACACTGAGGAACATGATTATGGGATCAACCCTAATGGCCACAACCTCCATTCTTCTGTCCACAGGCTTAGCAGCTGTTCTAAGCAGCACATACAGCATAAAGAAGCCCTTAAATGACACTGCTTATGGTGCCCAGGGTGAGTTCATTGTGGCTCTCAAATACGTAACCCTACTCACCATCTTCGTCTTCTCCTTCTTCTTTTACTCTCTCTCTATCAGATTCATTAGCCAAGTGAATATTTTGATAAATGCCCCACAAGAAACTGATTGTCTCTACTCAGTTTCTCCCGATTATGTCTCTCAGCTTCTGGAGAAGGGGCTTTTTCTGAATACAGTGGGTAACAGGCTGTTTTATTCTGCTCTTCCTCTTCTTCTCTGGTTATTTGGGCCTGTTCTTGTGCTTCTCTGCTCTGCAACAATGGTGCCTGTGCTCTATAATCTTGATTTCGTTCATGCTACTGCAAAGAGGAAGGTGAATGTCAATGAAAGCACTGATTTTGTTTGA 705 42.55 MEWRKCYLDVTLVPLGFLINVVYHAWLWHKVKTQPLTTIIGINRSGRRFWVSAIMKDNDKKNILAVQTLRNMIMGSTLMATTSILLSTGLAAVLSSTYSIKKPLNDTAYGAQGEFIVALKYVTLLTIFVFSFFFYSLSIRFISQVNILINAPQETDCLYSVSPDYVSQLLEKGLFLNTVGNRLFYSALPLLLWLFGPVLVLLCSATMVPVLYNLDFVHATAKRKVNVNESTDFV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 359643 361255 + BLOR15873 Blo17g00052 72440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00052 234 Pfam Protein of unknown function, DUF599 12 218 IPR006747 -
Blo17g00052 234 PANTHER - 1 234 - -
Blo17g00052 234 PANTHER PLANT/F12B17-70 PROTEIN 1 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00052 - - - rcu:8282088 357.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01714 Blo-Chr1:56880889 Blo17g00052 Blo-Chr17:359643 2.64E-64 dispersed
Blo17g00052 Blo-Chr17:359643 Blo08g00222 Blo-Chr8:2607937 1.33E-27 dispersed
Blo07g00303 Blo-Chr7:3741279 Blo17g00052 Blo-Chr17:359643 1.25E-45 transposed
Blo13g00182 Blo-Chr13:7081474 Blo17g00052 Blo-Chr17:359643 7.44E-41 transposed
Blo17g00052 Blo-Chr17:359643 Blo18g00064 Blo-Chr18:455531 9.85E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g232 . . . . Bpe02g01203 . Bma04g00356 . . . Cma01g01590 . . . . . . Bhi04g01128 . . . Hepe10g0333 . Lcy13g1373 . . . . . . . . . Cone17ag1097 . . . . Cme03g01716 Blo17g00052 . . Bda13g01309 . . . . . Cmo01g01638 . Cma09g00544 . . . . Cpe02g00388 . . . . . . . Cla08g01247 Cam08g1705 Cec08g1285 Cco08g1406 Clacu08g1402 . Cre08g1187 Lsi08g01110 Csa02g02300 . Cme04g00311
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000958 3 4 2 3 3 2 4 2 2 2 2 2 5 2 3 4 2 4 6 2 3 2 3 3 2 2 2 5 3 1 85