Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00065 ATGGCCGACTCGGGAACCTCTCCTCAAGGCAAAATGTCCGGTCAAGTTGTCTCAGTCGCTGCCGGCGAATCTCACACCCTCGCTCTCACCGGAGATGGATGCGTCTATTCATGGGGAAAGGGGATGTTTGGGCGACTCGGCACTGGTTCTGAATCCGATGAGCTTTCTCCCGTTCTAGTCAATTTCGGATTGGAAGAAGAAAGGCTCAAATTTGTAGGAGTTGCTGCTGGTGCTTATCACAGTCTTGCTCTTGCAGGTGATGGTTCAGTTTGGTGCTGGGGATACAACGTCTGTGACTGTTACATGGATGGCCAACTTGGTTTCAATGGCGAGAATTCTCCCCGCCCATGTTTGCTCAAGAATTTCTCTGAGAGTTGTTCTCCTGCTTCTTCGACTAATGAGTCAGATGCTGAAGTTAAACCGCCATTAAAGATTTGTCTGGTTGAAGCTGGCGGAATGATGTCTCTTGCAATTGACAATCACGGAGTCCTCTGGATGTGGGGCGATTTTCCGGAACCAAATGCCAGGAACGAAGGCCAGTTCTGTCTTACAAGTAGTTTCATTCCGACCCCTATACGGGATTTCTATGGACTCTCTGTCGTTAAAGTTGGATGTGGAAATGATCATGTAGTTGTTCTTGTTAGTGCTGGAGAAACCCACAAAGTTGAAGATTTGGCTTGCTACTCTTGGGGAAACAACAGCCACGGCCAATTAGGACTTGGAGATAGAGAGAGCCGGCTGAATCCACGGCTCATCGAAAAGTTCAACGAAGAATCTCCTTGGAAAGTTTACGAGGTAGCTTGTGGGGCGTCCCACACAGCTCTGCTAAGTCACAGAAAGTGTTCAAATGGGAAAATAGAGAGCCTATGCTGGACTTTCGGTCTCGGAGAAAATGGGCAGCTTGGACGTGGAACGACGCAGAGCGAATCTCTTCCTCAACCTGTTAAAGAATTGCCAAATGATGTAGAGCTGAATTCTGTCGACTGTGGGTTGTTTCACACGAGTGTTGTATCATCGGATGGTGATGTATGGTCTTGGGGGATGGAGAAGGGTCTCGGGCTATGCCCAGATGCTTGTTTTGCTGGAACTGATGCAGGAGATGCTCTCTCTCCCCTGTTGATCTCTAAATTTGTAGATCCCATTCAAGTGGCGTGCGGTGCTGCACATACTGTTGTCGCCGCACATTCTGGATTTAAGCTTTGGTCATGGGGAAGAGGAAGAAATGGAGTCCTTGGAAATAACAAGACAGCAGATTGCTATGCACCACTTCCTCTGCTGTGGCCTCCAATGGAGATTCTCAAGCAAGAAGAACCGAAGACTGCCGAGGAGGAAAGCAAAACCAGAGAACAAACTTTTTCAGAGAAGGAAGATGAAAAGGAAATGGATAACAAAGTGTCTGTTTTGATGGGAGAATTGAGGATTCTTCAGGAGAGACTTTCAAGGGTGGAGAAGTATGCTAGTGTTCTTCACAGTAGTGTGTTTGGAAAGCCATTGGAGGAGAAAGACATTCCGGATTCGTTGCAGAGAATCGGTAGCTTAGAGATTGGAAGAGAGTGGGAAAACATGTTGGACGAGGCCGATCGATCGACGCTTGTTCGGTTGGAAGCGTTTTACCGGAATATGCTCGGCGGTGTTAAAGACAAGCTAATGAAGCGGAAGATCCAGGAGCTTATCAAGGAATGCATCCATTCTTCATCAACTACTGGACTATAA 1713 47.46 MADSGTSPQGKMSGQVVSVAAGESHTLALTGDGCVYSWGKGMFGRLGTGSESDELSPVLVNFGLEEERLKFVGVAAGAYHSLALAGDGSVWCWGYNVCDCYMDGQLGFNGENSPRPCLLKNFSESCSPASSTNESDAEVKPPLKICLVEAGGMMSLAIDNHGVLWMWGDFPEPNARNEGQFCLTSSFIPTPIRDFYGLSVVKVGCGNDHVVVLVSAGETHKVEDLACYSWGNNSHGQLGLGDRESRLNPRLIEKFNEESPWKVYEVACGASHTALLSHRKCSNGKIESLCWTFGLGENGQLGRGTTQSESLPQPVKELPNDVELNSVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDACFAGTDAGDALSPLLISKFVDPIQVACGAAHTVVAAHSGFKLWSWGRGRNGVLGNNKTADCYAPLPLLWPPMEILKQEEPKTAEEESKTREQTFSEKEDEKEMDNKVSVLMGELRILQERLSRVEKYASVLHSSVFGKPLEEKDIPDSLQRIGSLEIGREWENMLDEADRSTLVRLEAFYRNMLGGVKDKLMKRKIQELIKECIHSSSTTGL 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 484447 486646 + BLOR15886 Blo17g00065 72453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00065 570 Pfam Regulator of chromosome condensation (RCC1) repeat 32 84 IPR000408 -
Blo17g00065 570 Pfam Regulator of chromosome condensation (RCC1) repeat 340 392 IPR000408 -
Blo17g00065 570 Pfam Regulator of chromosome condensation (RCC1) repeat 290 336 IPR000408 -
Blo17g00065 570 Pfam Regulator of chromosome condensation (RCC1) repeat 227 276 IPR000408 -
Blo17g00065 570 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 9 566 - -
Blo17g00065 570 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 266 276 IPR000408 -
Blo17g00065 570 Gene3D - 223 435 IPR009091 -
Blo17g00065 570 Gene3D - 3 222 IPR009091 -
Blo17g00065 570 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 74 84 IPR000408 -
Blo17g00065 570 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 162 216 IPR000408 -
Blo17g00065 570 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 340 IPR000408 -
Blo17g00065 570 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 279 IPR000408 -
Blo17g00065 570 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 566 - -
Blo17g00065 570 SUPERFAMILY RCC1/BLIP-II 142 428 IPR009091 -
Blo17g00065 570 SUPERFAMILY RCC1/BLIP-II 15 110 IPR009091 -
Blo17g00065 570 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 19 29 IPR000408 -
Blo17g00065 570 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 87 IPR000408 -
Blo17g00065 570 MobiDBLite consensus disorder prediction 436 460 - -
Blo17g00065 570 PRINTS Chromosome condensation regulator RCC1 signature 162 178 IPR000408 -
Blo17g00065 570 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Blo17g00065 570 PRINTS Chromosome condensation regulator RCC1 signature 330 348 IPR000408 -
Blo17g00065 570 PRINTS Chromosome condensation regulator RCC1 signature 71 84 IPR000408 -
Blo17g00065 570 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Blo17g00065 570 PRINTS Chromosome condensation regulator RCC1 signature 393 414 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00065 - - - qsu:111998155 749.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00065 Blo18g00078 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00065 Blo-Chr17:484447 Blo05g00521 Blo-Chr5:9551003 9.86E-16 dispersed
Blo01g01332 Blo-Chr1:50868512 Blo17g00065 Blo-Chr17:484447 1.21E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g229 . . . . . . . . . . Cma01g01592 . . . Sed03g1505 . Cpe06g00493 Bhi04g01132 Tan02g2588 Cmetu03g0558 . Hepe10g0336 . Lcy13g1380 . . . . . . . . . Cone17ag1131 Cone20ag0617 . . . Cme03g01719 Blo17g00065 Blo18g00078 . . . . . . . Cmo01g01640 . Cma09g00546 . . . . Cpe02g00385 . . . . . . . Cla08g01244 Cam08g1702 Cec08g1282 Cco08g1403 Clacu08g1399 . Cre08g1184 Lsi08g01106 Csa02g02296 . Cme04g00308
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00065 Blo_Chr17 FPKM 10.84391 11.460252 10.891777 11.776994 49.628384 44.857014 46.533638 9.917576 8.930945 11.433266