Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00071 ATGAGAAGAATTCTTGAAATGGGTCAAGAACTTTTCTCGTTTTGTCAGGTGGAAAAGAGAAGATTGCCATTGCTAATTGGGATTATGGTGGCTGTGATTTTGGTCTTCCAGTACTTTGAACTTCCATATCAGTATGTTCTATCTTCTTTGTTTTCTGCTGGGAAAGGTTCGTTTGTCGGGGAGAATAGCACACAGGCTGCATATTCTCAGTTTGAGTTCAACGTAAGTAACAATGTGACATCATCCATTGATATGAACGCAACGGCCCCGTTTTCTGAAGACATTGATGGAACAAGTAATAATGAAAGGAGAGGAGACGATGATTTCGAATCTGAGATAAATAGAGGTTTTAATAAATTGTTAGGATTGGACGAGGATGATGATTATGAGGCATCTCCTCCCTGGAATTCAGTAGAATCAAGCAAAAACTCAACAATGGATGATCTTGAATCTTCAGAATCTGAATTTAGCTTGGAGGATGTTGGAGGAAAGAATCAGAGTTTGTTCCAGAACAAAGATTCTTCCCATAATGTCTCGACAGAAATAAGGATGGAAAATAATACCAAGATATCAGAGAAGAAATGTGAGAACAATCGAAGCCCATATGCTGGTTTGGCATCTCCTTCACCAGCTGGACAACCTATGGATTCGTCTGAAAACACAATCTCTCCCACTGCATCTTCTGAATCTAATCCATTTTCAAAGGAGAAAGATGGAATAACTCCACACAATAAATCTGAGAAATCTGGGCAGTCGCCAAGTGATTTCATCTTGTCAGCCAATACATCTGCTGTCGACAAAGGATCAAAGGTTCCTCCCCCTCCGACAGGAGTTTATACCATATCTGAGATGAAGAAATTGTTAATCAAGAATCGCGCATCATCCAATCCAACTGTACCGCTATGGTCTTCAGCAGTTGACAAAGAACTACTAAGCACAAAAACACAAATTGAGCAGGCACCTGCAGTTGATAACGATCCAAATCTTCATCCGCCATTATTTTGGAACTTTTCCAAGTTCAAAAGGAGCTATGAACTAATGGAGGATAATCTCAAAGTCTACATTTATAGAGAAGGAGAAAAGCCAATCTTCCACCAGGGTCCAATCCAAGGCATATATGCTTCTGAGGGATGGTTCATGAGGCTCCTCCAAGCTAACAAAAAATTCGTCACGAAAAACCCAAAGAAAGCTCATCTGTTCTACATACCCTTCAGTTCTCGAAATTTAGAAGAAAGATTATATGTTCCTGGCTCACACAGTCATAAAAATCTATTGAAATTCTTGGAAAATTACTTGGATTCAATTGCAGTGAAGTATCCTTTCTGGAACCGAACTGGAGGAGCCGACCATTTCGTTGTTGCTTGCCATGATTGGGCTCCTTCGGAAACGAGGATACTTATGGCCAAAAGCATAAGGGCCCTCTGCAACTCTGATGTGAGGGAAGGTTTTGTTTTTGGAAAAGATGTTTCTCTCCCCGAAACATATGTGCGATTGCCTCGGAATCCTCTTAGAGGCATAGGGGGAAATTCCGCTTCTCAAAGGTCAATCCTCTCATTTTTCGCAGGCAGTGATCATGGCTATCTTCGGCCAATCCTCCTTCGGTATTGGCAAAACAAAGATCCCGACATGAAAATTTACGGCCCCTTACCGAAAGGGAAGGGGAAGATGGACTATGGATGGCATATGAAGAACAGCAAGTATTGCATTTGTGCAAAAGGCTATGAAGTTAACAGTCCTCGAGTTGTCGAAGCTATCTTCTTCGAATGCGTTCCCGTTATTATATCAGACAATTTTGTGCCTCCCTTTTTGGAAATTTTGAATTGGGAGTCTTTTGCTGTTTTTGTGATGGAAAAAGACATTCCAAATTTGAAGAACATACTCCTCTCCATTTCAGATCGGAGGTATAGAAAGATGCAGATGATGGTGAAGAAGGTCCAACAGCATTTTCTTTGGCATTCCAGGCCTGTAAAGTATGATATATTTCATATGATTCTTCACTCAGTTTGGGTCAATAGGCTTTATCAAATCAGACCCAGATAG 2040 40.78 MRRILEMGQELFSFCQVEKRRLPLLIGIMVAVILVFQYFELPYQYVLSSLFSAGKGSFVGENSTQAAYSQFEFNVSNNVTSSIDMNATAPFSEDIDGTSNNERRGDDDFESEINRGFNKLLGLDEDDDYEASPPWNSVESSKNSTMDDLESSESEFSLEDVGGKNQSLFQNKDSSHNVSTEIRMENNTKISEKKCENNRSPYAGLASPSPAGQPMDSSENTISPTASSESNPFSKEKDGITPHNKSEKSGQSPSDFILSANTSAVDKGSKVPPPPTGVYTISEMKKLLIKNRASSNPTVPLWSSAVDKELLSTKTQIEQAPAVDNDPNLHPPLFWNFSKFKRSYELMEDNLKVYIYREGEKPIFHQGPIQGIYASEGWFMRLLQANKKFVTKNPKKAHLFYIPFSSRNLEERLYVPGSHSHKNLLKFLENYLDSIAVKYPFWNRTGGADHFVVACHDWAPSETRILMAKSIRALCNSDVREGFVFGKDVSLPETYVRLPRNPLRGIGGNSASQRSILSFFAGSDHGYLRPILLRYWQNKDPDMKIYGPLPKGKGKMDYGWHMKNSKYCICAKGYEVNSPRVVEAIFFECVPVIISDNFVPPFLEILNWESFAVFVMEKDIPNLKNILLSISDRRYRKMQMMVKKVQQHFLWHSRPVKYDIFHMILHSVWVNRLYQIRPR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 540830 543507 - BLOR15892 Blo17g00071 72459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00071 679 MobiDBLite consensus disorder prediction 158 185 - -
Blo17g00071 679 MobiDBLite consensus disorder prediction 134 151 - -
Blo17g00071 679 MobiDBLite consensus disorder prediction 89 256 - -
Blo17g00071 679 MobiDBLite consensus disorder prediction 97 126 - -
Blo17g00071 679 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 245 676 IPR004263 GO:0006486|GO:0016757
Blo17g00071 679 MobiDBLite consensus disorder prediction 211 235 - -
Blo17g00071 679 PANTHER EXOSTOSIN FAMILY PROTEIN 245 676 - -
Blo17g00071 679 Pfam Exostosin family 348 628 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00071 - - - mcha:111018445 736.873
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01393 Blo17g00071 CCT
Blo01g01393 Blo17g00071 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00312 Blo-Chr8:4450485 Blo17g00071 Blo-Chr17:540830 1.72E-175 dispersed
Blo08g00313 Blo-Chr8:4494315 Blo17g00071 Blo-Chr17:540830 2.98E-89 dispersed
Blo12g00503 Blo-Chr12:22901709 Blo17g00071 Blo-Chr17:540830 4.58E-94 dispersed
Blo17g00071 Blo-Chr17:540830 Blo14g00513 Blo-Chr14:7111588 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g294 Blo01g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1691 . . . . . . Blo17g00071 . . Bda13g01333 Bpe14g00515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008541 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00071 Blo_Chr17 FPKM 6.896676 8.903826 7.635424 8.510931 9.163223 8.565059 7.685813 1.310769 1.984592 1.267612