Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00072 ATGGCGAAAATAGCCCTGGGAACTACCCGAGAAGCCACCCAACCCGACTGTCTTAAAGCCCTCGTTGTTGAATTTATCACCACCTTTCTCTTCGTCTTCGCCGGTGTTGGAACAGCGATGGCCGCCGATAAGCTTGAAGGAACTCCATTCTTGGGGTTGTTCGCGGTGGCGATAGCGCATGCACTTGTGGTGGCTGTAATGATATCGGGCGGCCACATTTCCGGCGGTCATCTCAATCCAGCCGTCACCCTCGGCCTACTCGTCGGTGGGCATATCACGTTCTTCAGATCCGTTCTCTACTGGATCGATCAATTGCTAGCATCTGCCGCAGCTTGTTATCTCCTTTCTTATCTCACCGGAGGACTGACAACTCCGATCCATTCACTGGCGAGTGGAGTAGACTACTTACAGGGTGTCATATGGGAGGTAGTATTAACATTTTCGTTGCTGTTCACTGTGTATGCAACGATAGTGGACCCGAAGAAAGGAGCCATCGACGGTCTGGGGCCGACGCTGACTGGCTTTGTGGTGGGTGCCAACATATTAGCCGGAGGGGCCTTCTCCGGCGCTTCGATGAACCCGGCAAGATCCTTCGGCCCTGCGTTGGTGAGCTGGGACTGGACCGACCACTGGGTTTACTGGGTCGGCCCCCTCATCGGTGGAGGGCTTGCTGGGTTTATCTATGAAAATATCTTCATTCTTAGGTCTTCTCACCTCCCTCTTCCCAGAGGAGACGATGATATCTACTGA 750 53.6 MAKIALGTTREATQPDCLKALVVEFITTFLFVFAGVGTAMAADKLEGTPFLGLFAVAIAHALVVAVMISGGHISGGHLNPAVTLGLLVGGHITFFRSVLYWIDQLLASAAACYLLSYLTGGLTTPIHSLASGVDYLQGVIWEVVLTFSLLFTVYATIVDPKKGAIDGLGPTLTGFVVGANILAGGAFSGASMNPARSFGPALVSWDWTDHWVYWVGPLIGGGLAGFIYENIFILRSSHLPLPRGDDDIY 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 548820 549836 - BLOR15893 Blo17g00072 72460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00072 249 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 PANTHER AQUAPORIN TIP4-1 2 246 - -
Blo17g00072 249 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Blo17g00072 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo17g00072 249 Gene3D Glycerol uptake facilitator protein. 2 245 IPR023271 -
Blo17g00072 249 SUPERFAMILY Aquaporin-like 11 241 IPR023271 -
Blo17g00072 249 PANTHER AQUAPORIN-8 2 246 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00779 Blo-Chr3:32479753 Blo17g00072 Blo-Chr17:548820 5.83E-27 dispersed
Blo07g01383 Blo-Chr7:33920361 Blo17g00072 Blo-Chr17:548820 1.03E-89 dispersed
Blo17g00072 Blo-Chr17:548820 Blo14g00177 Blo-Chr14:1386783 1.95E-30 dispersed
Blo19g00111 Blo-Chr19:3011372 Blo17g00072 Blo-Chr17:548820 5.53E-26 dispersed
Blo17g00072 Blo-Chr17:548820 Blo15g00130 Blo-Chr15:1155224 1.59E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00072 K09873 - jre:109009497 419.468