Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00075 ATGGCGTCTATTAGAAGAACCTTGTCTCCATTTCCTCGTCCTGGAGCTTCACTGACTGGAGAAGTGAGTTTAGGGGGTTCTCCTCTATCCAAATCATCACCTTCTCCTCTATCCAAGTCATCATCTTTTCCTCAAAATCATTCACCATCAAGTGGACTATCTTCTCTGCTGACTTTGTTGGACACACAAGCACTTTTTGGCCGTGTTTTCTCGTCGAGGCCATCTAGGTTCCTCGAGAAGGCTAAACCAAAAGGTCAACTATGGAGAAGGATGCTTTTTCATTTCTTAATTTCTTTTACAGTTGGTGTCTTAATCGGCCTCACCCCTTTTGCTTCAATGAGTTTTCCCGTGAATTTCATGTCGAAGAGTCAAAATTTCCATTTTAAGGAGATATCAGGGGTTGAGAACTTCAATTTTCCTGATAATATTACGGGAGAGTTGGTCCAGGTAGAGAATGGAAATTTGACAGCCAATGCTACTATTGCAGTGGGCATGAGACATAGCTACCATAGTTTTCTAGACCATAATCAGTCGATTGTTCAAGATCCAAATCTCGAGTCTCGAAAACTGTTGATTATTGTAACTCCAACATCGGCTCATCCTTTTCAAGCCTATTATCTAAACCGTTTGGCACATACGATAAAACTTGTTGTGCCTCCAATATTGTGGATTGTTGTTGAAATGAACGCCCAATCCGATGAGACGGCTGATATCTTGAGGAAAAGTGGAGTTATGTATAGGCATCTTGTTTGCAGTGAAAATCTAACAGGTGTGGAGGATGAGAAAGTTCATCAAAGAAATATTGCATTGTCTCACATCGAAACTCACCACCTAGACGGCATCATTTACTTTGCAGATGAGAGCAACATATACTTGGCTGATCTTCTTGAGCATATAAGGCAGATCAGGCGATTTGGAACGTGGACAGTGGCGAAACTGAGTAAAAATAGTGACAGAAGTATAATAGAGGGGCCTATCTGTAATGGTACACAAGTAATAGGCTGGAAAATCGACGATCGGAGAATGAGATTCCGCAGATTCCATGTTGAAATGTCGGGATTTGCTTTTAACAGTACGATACTCTGGGATTCGAAGAGGTGGCACAGACCCACCATCGAACCTATTCGACAACTTGACTCCGTCAATGATGGGTTCCGTGTAAGTAGATTTATCGAACAAATTGTAGAGGATGAAAGTCAGATGGAAGGTCTACCGCCTGATTGTTCGAAAATCTTGGTTTGGAATCTTGATCTCGAGTCGTCTAATCTGGTCTATCCTAAGAAATGGATCATGGTGACTTAA 1302 41.71 MASIRRTLSPFPRPGASLTGEVSLGGSPLSKSSPSPLSKSSSFPQNHSPSSGLSSLLTLLDTQALFGRVFSSRPSRFLEKAKPKGQLWRRMLFHFLISFTVGVLIGLTPFASMSFPVNFMSKSQNFHFKEISGVENFNFPDNITGELVQVENGNLTANATIAVGMRHSYHSFLDHNQSIVQDPNLESRKLLIIVTPTSAHPFQAYYLNRLAHTIKLVVPPILWIVVEMNAQSDETADILRKSGVMYRHLVCSENLTGVEDEKVHQRNIALSHIETHHLDGIIYFADESNIYLADLLEHIRQIRRFGTWTVAKLSKNSDRSIIEGPICNGTQVIGWKIDDRRMRFRRFHVEMSGFAFNSTILWDSKRWHRPTIEPIRQLDSVNDGFRVSRFIEQIVEDESQMEGLPPDCSKILVWNLDLESSNLVYPKKWIMVT 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 559838 561380 - BLOR15896 Blo17g00075 72463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00075 433 MobiDBLite consensus disorder prediction 23 46 - -
Blo17g00075 433 MobiDBLite consensus disorder prediction 1 46 - -
Blo17g00075 433 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 190 431 IPR029044 -
Blo17g00075 433 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 431 - -
Blo17g00075 433 SUPERFAMILY Nucleotide-diphospho-sugar transferases 189 429 IPR029044 -
Blo17g00075 433 CDD GlcAT-I 189 419 IPR005027 GO:0015018|GO:0016020
Blo17g00075 433 Pfam Glycosyltransferase family 43 210 419 IPR005027 GO:0015018|GO:0016020
Blo17g00075 433 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 431 IPR005027 GO:0015018|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00075 K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] - cit:102615799 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01787 Blo-Chr1:57593969 Blo17g00075 Blo-Chr17:559838 5.60E-114 dispersed
Blo05g00637 Blo-Chr5:20027851 Blo17g00075 Blo-Chr17:559838 2.29E-21 dispersed
Blo07g01408 Blo-Chr7:34111472 Blo17g00075 Blo-Chr17:559838 2.82E-64 dispersed
Blo12g00742 Blo-Chr12:25777589 Blo17g00075 Blo-Chr17:559838 2.64E-09 dispersed
Blo17g00075 Blo-Chr17:559838 Blo18g00086 Blo-Chr18:709203 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g310 . . . . Bpe02g01178 . . . . . . . Car09g00564 . . . Cpe06g00471 . . . . . . . . . . . . . . . . Cone17ag1154 Cone20ag0574 . Csa03g04555 Chy04g00147 . Blo17g00075 . Bda01g00933 Bda13g01336 Bpe14g00511 . . . . . Cmo09g00620 Cma09g00638 . . . . . Bhi09g02586 . . . . . . . . . . . . . . . . Cme04g00173
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010529 2 4 2 2 2 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00075 Blo_Chr17 FPKM 26.742508 28.434986 21.857826 21.333248 15.676832 15.523717 16.492468 29.273815 30.61618 28.485809