Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00087 ATGGACGATCTTTTATCCCCTGACTGGCCCTTCTATCCCTTGTATCAAAACGCGGCTGATTTTGTTCCACGTTCTTCGTTCGGAGCACTGTTCCCGTCGTTCGAACGAAGCTTCACCAGCTTCCCTTTGGATCAAGCCTGGTACTACCCTTCTGCTAACGATTTATCAGGAATGGAAAACACCGATTCTTCTTATAATGGCTTTCAAACATCCCCTTTTACGCTCCCCATTTCTTATTTGCACGAAGAAGAACTCTGTGTACTTCCGTTTGAAGCCTCTTGCGAAATGGAGGAAGTTCGAACGACGGAAGTGGACGTTCGAACAAAGAAATTGCAGAGGAGGCCATCGAAGAATCTGATGTCCGAGAGAAGACGAAGAAAGCGACTGAATGAGAGGCTCTCGATGCTACGATCTATTGTCCCTAAGATAAGCAAGATGGACAGAACTGCTATACTTGGAGACACCATAGATTACATGAAAGAACTGTTCGAGAAAATCAGCAACTTAAAACGAGAAATCGAAGTGGGTGCTAATCAGTTTGAGTCAGTGGGTCCTTGTAGGGACGTCAAATTAGACGAATTCTCGATTAAAACTTTCCCAAAGCTGGAGGTAGAAGAAAGAAATGGCGAAACTTGGATCGAGATTCGCTGCCCAGGAAAGCCTGGTTTATTGTCACTGACAGTGAATACTCTCGAAGCATTGGGCCTTCAGATCAAAGAGTGCGTTATTAGCTCCTTCAATGACTTTGCAATGCATGCTTCTTGTTCTAAGGAACCCAAGCAAGGAACAATGGCGGGTCCTGAAGAAATTAAGAATGCATTGCTCAGAAATGCAGGCTATGAAGGAAGACGAACGTAG 858 44.76 MDDLLSPDWPFYPLYQNAADFVPRSSFGALFPSFERSFTSFPLDQAWYYPSANDLSGMENTDSSYNGFQTSPFTLPISYLHEEELCVLPFEASCEMEEVRTTEVDVRTKKLQRRPSKNLMSERRRRKRLNERLSMLRSIVPKISKMDRTAILGDTIDYMKELFEKISNLKREIEVGANQFESVGPCRDVKLDEFSIKTFPKLEVEERNGETWIEIRCPGKPGLLSLTVNTLEALGLQIKECVISSFNDFAMHASCSKEPKQGTMAGPEEIKNALLRNAGYEGRRT 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 677593 678715 - BLOR15908 Blo17g00087 72475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00087 285 CDD ACT_UUR-ACR-like 213 251 - -
Blo17g00087 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 179 IPR036638 GO:0046983
Blo17g00087 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Blo17g00087 285 Pfam Helix-loop-helix DNA-binding domain 119 162 IPR011598 GO:0046983
Blo17g00087 285 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 55 283 - -
Blo17g00087 285 Gene3D - 103 163 IPR036638 GO:0046983
Blo17g00087 285 Coils Coil 159 179 - -
Blo17g00087 285 PANTHER DNA BINDING PROTEIN 55 283 - -
Blo17g00087 285 SMART finulus 119 168 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00741 Blo17g00087 CCT
Blo01g01790 Blo17g00087 CCT
Blo17g00087 Blo18g00096 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01790 Blo-Chr1:57630646 Blo17g00087 Blo-Chr17:677593 1.13E-47 dispersed
Blo16g00289 Blo-Chr16:6960858 Blo17g00087 Blo-Chr17:677593 5.87E-24 dispersed
Blo17g00087 Blo-Chr17:677593 Blo01g00396 Blo-Chr1:4479393 5.40E-18 dispersed
Blo12g00741 Blo-Chr12:25767279 Blo17g00087 Blo-Chr17:677593 1.24E-51 wgd
Blo17g00087 Blo-Chr17:677593 Blo18g00096 Blo-Chr18:810869 1.34E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13486 PF00010 HLH 9.50E-09 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00087 - - vvi:100250635 261.922