Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo17g00099 | ATGTCGTACTACTACTCCGCCCGCGTTTCCTTCGGATACACCGCAGGCTTCGCCGGAATGGCCTCTTCTACAGCTCCTGGCATAATTACTTCATTACCTACACCACAAACGGATGCGGACGAAATCTTCGCATCCGCATTCATCTGCAAGACCAACTTTCGTAGGCAAGTCCTAAGGTATTCCCCGACGACAGTGCTAAATCTACTTCAGGAGGTAGCGCAGGTTCCGGAAGGAAAGATTGATTGGAATGCGTTAGTTAAGAACACCGTTACCGGGATTTCTAATGCTAGGGAATATCAGATGCTATGGCGGTATATGGCTTATCGTCATTCCTTGTCTGAGAAGTTGGAAGAGGAAGCGGAACCTCTGGAAGATGATAGTGACCTGGAGTATGAATTGGAACCTTTACCAGCTGTGAGTAATGAATCTTTGACAGAGGTTGCCGCCTGTGTGAAGGTATTGATTGCTTCTGGCTTTCCAAAAGACTCAAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTATAATCAATCAGCTAGATTAGAAAATTCAGAATCTGCTTGTTCAACGCAAGGGACATACATTACCATTCCAGTTTCTGTTCAGAGACAGCCTGCCCCTGTACCTTCTTCTGTGGAAGGATTAGATGCAAATGTTACAAGTAACGGCATTATGCCTTCTCGAAGAAAAAGAAAACCCTGGTCTGAGGCGGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGAGTGTTAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTCTCTGAGGACCAAGTCGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAACAATGTTAAAGCAATTTGCACAGTGAACTCAGAATCTGCTGTAAGAGCTACAGCTGTTGCTGCTGGAGCTCGCATTGCTTCCCCATCTGATGCGGCATCTCTACTTAAGGCTGCTCAAGGAAAGAACGCCATTCACATAATGCCAACTGGCGCTGGTTCAATCAAATCGTCTATTTCTGGTGGTGGGTCTATCCAATCAGATACTCGTCCTAATGTACACTATATTTCTACTCTCAAGTCGGCTAATTCTCTCGCAACTTATCCTCCTATCACTCCTCATGCATTGCGTGTCAACTCAACGAAGACCTTATCATCGACAGTTCAGCATAAACTATCGAGTGCTGCCACTTCGTCGAATCTATTAGATCCCAAAAAGAATGTAAGCTCTAACATAGGTGCTGAATCTTCAATAAAGCAAGAGATAAAAATTCCTAAATTAGGGGAAAAGCTGAGACAGGAGACCCAAGCAGATGAATCCTGTGCTGCAGAAAATGCAGTCTCTGAGAAATTTCAAGCGGAAAAAACATCCTCACCAAGCCCAGAAGCTGAATTAGATAGTCAAACCACCGGAGTTGGTAAATCTTGCTCTTCATCATTAAACATTAAGATTGCGGACAGTGATCAGAATGATAGGAAAGAATGGACAGGTGATAATGAGAAAGTGAGTTTGTTCAAGAATCAATTGTCGGAAGAGAACTGCAAGAGTCGATCCGTTGGCAAGAAATGTGAGAGTGGGATCGGCGCAATTTGCGACGAAGTTGAAAGGAAAGAGCACACAGACGATAATACAATGACGGATGCATCGATTGATTTAGCAGGTGAGAATCAATCATTCGCCAAGAAATACGACGTTACTCCGATTACTTCTGGTGGGTGTGTTCAAATGTCAGAATCTTCAAGCATGGAAGAAGATGGCAAACAAAAAGTTGAAGGAGAATACAAGGCCCTAATACAATTTGATAGCTCATTTGTTACTTATTTGTTCATGTTAAGCCTTATCTTCTTTGATGTGGAGAACTTTCTGTTTGATCCTCAGAAGCAGAATCCGTCGACACTTCAAATTTTGAGAAGAGTACCTAGCCCAGCTTCTGTCTCTTCCAAATACAATATTTTCTTGTGCCAATCTGTACTGGTACCAGGAGGAGGAGGAAGTGGGCCTTCTATTTTAAAATCTGCTACTCTGGTTTTGTCTAGATCATATGATGCTTTATGTGGGAGCCTTCTAATCATTAAATTGATTCCAGCAATTGGTCTCATTGCCTTTGCTGCTTGGGGGGTTCGGCCTCTCATCCATTTGAGCAGGAATTTATTTCTCCATACAACAGATAGTAATTGGAGCAGAAGTAATGTTTACTATGTTACAACGTCTTACATTCAACCGGTGCTGCTATGGATTGGTGCTACATTACTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCGTGATTCAACATGCACAAAAGTTCTTTGTTGAGACAAATGACTCTAGCGAAACAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACAGCAGTATGGGTTGCTGCTCTATCACTGTTCATGGAGTTGCTCGGTTTCTCTACGCAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTAATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATACCAAACCACAAGTTCACCGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATCTAGCCATCAGCCACTTTGACGTCAATAAGATCAATAATATTGTGGCTGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTACATTGATCCTGAAAATCAAGCTCTCATGATTCTGGTTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCCCGGCTTGCTACACCAATTCGCACAATTCAAAAGACTTTCAGAGAGGGTGACTTGGAAGAAGTAACTTTTGCCGATACCATATTCTCTCGTTCCACAGCAGCTAATGATCGGCCACTGCTACTCATTGAACCCTTGTATAAGATCAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACGCGATCAGACGACGAAAAGGACACCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAGGCTGGATTAGTATCAAATCTTGATGGCAAAACAGATGATAAGACGAGAGGAAAAGAGGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTAAAGCAGGAGTGACATTGGAAAAGCCCTCGGCTGTTTTGTCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTGCAAAGCAAGATGGCGAAGCATTTTCAGAATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCCATTGAGGAAGAAATGCCTTCACCTACAACACTTGAATCAAAAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGCAACCAATCTAAAGATGGTCAGATACCAACTGTTCCGAATGCGACGCAAAATGATTAA | 3888 | 42.8 | MSYYYSARVSFGYTAGFAGMASSTAPGIITSLPTPQTDADEIFASAFICKTNFRRQVLRYSPTTVLNLLQEVAQVPEGKIDWNALVKNTVTGISNAREYQMLWRYMAYRHSLSEKLEEEAEPLEDDSDLEYELEPLPAVSNESLTEVAACVKVLIASGFPKDSSVPNSSTVEAPLTINLSYNQSARLENSESACSTQGTYITIPVSVQRQPAPVPSSVEGLDANVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKSVRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTVNSESAVRATAVAAGARIASPSDAASLLKAAQGKNAIHIMPTGAGSIKSSISGGGSIQSDTRPNVHYISTLKSANSLATYPPITPHALRVNSTKTLSSTVQHKLSSAATSSNLLDPKKNVSSNIGAESSIKQEIKIPKLGEKLRQETQADESCAAENAVSEKFQAEKTSSPSPEAELDSQTTGVGKSCSSSLNIKIADSDQNDRKEWTGDNEKVSLFKNQLSEENCKSRSVGKKCESGIGAICDEVERKEHTDDNTMTDASIDLAGENQSFAKKYDVTPITSGGCVQMSESSSMEEDGKQKVEGEYKALIQFDSSFVTYLFMLSLIFFDVENFLFDPQKQNPSTLQILRRVPSPASVSSKYNIFLCQSVLVPGGGGSGPSILKSATLVLSRSYDALCGSLLIIKLIPAIGLIAFAAWGVRPLIHLSRNLFLHTTDSNWSRSNVYYVTTSYIQPVLLWIGATLLCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFAYCLSSVIQHAQKFFVETNDSSETRNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTIQKTFREGDLEEVTFADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDTKQEAASTSNMNASDKAGLVSNLDGKTDDKTRGKEDENMEYKSNNTTPKAGVTLEKPSAVLSESDSEQIDKSSVGFRAKQDGEAFSESPGISMPPLEENILLGVALEGSKRTLPIEEEMPSPTTLESKEMSAHRTPLSQISNQSKDGQIPTVPNATQND | 1295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 810584 | 828404 | - | BLOR15920 | Blo17g00099 | 72487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 1120 | 1189 | - | - | |
Blo17g00099 | 1295 | Gene3D | - | 232 | 290 | - | - | |
Blo17g00099 | 1295 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 672 | 1286 | - | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 473 | 518 | - | - | |
Blo17g00099 | 1295 | SUPERFAMILY | Sm-like ribonucleoproteins | 904 | 974 | IPR010920 | - | |
Blo17g00099 | 1295 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 234 | 289 | IPR017930 | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 1260 | 1295 | - | - | |
Blo17g00099 | 1295 | ProSiteProfiles | Myb-like domain profile. | 232 | 281 | IPR001005 | - | |
Blo17g00099 | 1295 | Pfam | Mechanosensitive ion channel | 861 | 1068 | IPR006685 | GO:0016020|GO:0055085 | |
Blo17g00099 | 1295 | Pfam | Myb-like DNA-binding domain | 237 | 281 | IPR001005 | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 1120 | 1140 | - | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 1246 | 1295 | - | - | |
Blo17g00099 | 1295 | Gene3D | - | 816 | 918 | - | - | |
Blo17g00099 | 1295 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 672 | 1286 | IPR045042 | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 492 | 518 | - | - | |
Blo17g00099 | 1295 | SUPERFAMILY | Homeodomain-like | 234 | 286 | IPR009057 | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 213 | 237 | - | - | |
Blo17g00099 | 1295 | CDD | SANT_TRF | 238 | 286 | - | - | |
Blo17g00099 | 1295 | Gene3D | - | 920 | 975 | IPR023408 | - | |
Blo17g00099 | 1295 | MobiDBLite | consensus disorder prediction | 1158 | 1178 | - | - | |
Blo17g00099 | 1295 | SMART | sant | 236 | 287 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo17g00099 | Blo-Chr17:810584 | Blo02g00713 | Blo-Chr2:22499692 | 1.38E-08 | dispersed | |
Blo18g00108 | Blo-Chr18:1005456 | Blo17g00099 | Blo-Chr17:810584 | 8.57E-58 | transposed | |
Blo17g00099 | Blo-Chr17:810584 | Blo18g00106 | Blo-Chr18:991140 | 0 | wgd | |
Blo17g00099 | Blo-Chr17:810584 | Blo05g00739 | Blo-Chr5:26349643 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13490 | PF00924 | MS_channel | 4.80E-28 | No_clan | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo17g00099 | K22047 | - | csv:101213477 | 811.986 |