Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00099 ATGTCGTACTACTACTCCGCCCGCGTTTCCTTCGGATACACCGCAGGCTTCGCCGGAATGGCCTCTTCTACAGCTCCTGGCATAATTACTTCATTACCTACACCACAAACGGATGCGGACGAAATCTTCGCATCCGCATTCATCTGCAAGACCAACTTTCGTAGGCAAGTCCTAAGGTATTCCCCGACGACAGTGCTAAATCTACTTCAGGAGGTAGCGCAGGTTCCGGAAGGAAAGATTGATTGGAATGCGTTAGTTAAGAACACCGTTACCGGGATTTCTAATGCTAGGGAATATCAGATGCTATGGCGGTATATGGCTTATCGTCATTCCTTGTCTGAGAAGTTGGAAGAGGAAGCGGAACCTCTGGAAGATGATAGTGACCTGGAGTATGAATTGGAACCTTTACCAGCTGTGAGTAATGAATCTTTGACAGAGGTTGCCGCCTGTGTGAAGGTATTGATTGCTTCTGGCTTTCCAAAAGACTCAAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTATAATCAATCAGCTAGATTAGAAAATTCAGAATCTGCTTGTTCAACGCAAGGGACATACATTACCATTCCAGTTTCTGTTCAGAGACAGCCTGCCCCTGTACCTTCTTCTGTGGAAGGATTAGATGCAAATGTTACAAGTAACGGCATTATGCCTTCTCGAAGAAAAAGAAAACCCTGGTCTGAGGCGGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGAGTGTTAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTCTCTGAGGACCAAGTCGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAACAATGTTAAAGCAATTTGCACAGTGAACTCAGAATCTGCTGTAAGAGCTACAGCTGTTGCTGCTGGAGCTCGCATTGCTTCCCCATCTGATGCGGCATCTCTACTTAAGGCTGCTCAAGGAAAGAACGCCATTCACATAATGCCAACTGGCGCTGGTTCAATCAAATCGTCTATTTCTGGTGGTGGGTCTATCCAATCAGATACTCGTCCTAATGTACACTATATTTCTACTCTCAAGTCGGCTAATTCTCTCGCAACTTATCCTCCTATCACTCCTCATGCATTGCGTGTCAACTCAACGAAGACCTTATCATCGACAGTTCAGCATAAACTATCGAGTGCTGCCACTTCGTCGAATCTATTAGATCCCAAAAAGAATGTAAGCTCTAACATAGGTGCTGAATCTTCAATAAAGCAAGAGATAAAAATTCCTAAATTAGGGGAAAAGCTGAGACAGGAGACCCAAGCAGATGAATCCTGTGCTGCAGAAAATGCAGTCTCTGAGAAATTTCAAGCGGAAAAAACATCCTCACCAAGCCCAGAAGCTGAATTAGATAGTCAAACCACCGGAGTTGGTAAATCTTGCTCTTCATCATTAAACATTAAGATTGCGGACAGTGATCAGAATGATAGGAAAGAATGGACAGGTGATAATGAGAAAGTGAGTTTGTTCAAGAATCAATTGTCGGAAGAGAACTGCAAGAGTCGATCCGTTGGCAAGAAATGTGAGAGTGGGATCGGCGCAATTTGCGACGAAGTTGAAAGGAAAGAGCACACAGACGATAATACAATGACGGATGCATCGATTGATTTAGCAGGTGAGAATCAATCATTCGCCAAGAAATACGACGTTACTCCGATTACTTCTGGTGGGTGTGTTCAAATGTCAGAATCTTCAAGCATGGAAGAAGATGGCAAACAAAAAGTTGAAGGAGAATACAAGGCCCTAATACAATTTGATAGCTCATTTGTTACTTATTTGTTCATGTTAAGCCTTATCTTCTTTGATGTGGAGAACTTTCTGTTTGATCCTCAGAAGCAGAATCCGTCGACACTTCAAATTTTGAGAAGAGTACCTAGCCCAGCTTCTGTCTCTTCCAAATACAATATTTTCTTGTGCCAATCTGTACTGGTACCAGGAGGAGGAGGAAGTGGGCCTTCTATTTTAAAATCTGCTACTCTGGTTTTGTCTAGATCATATGATGCTTTATGTGGGAGCCTTCTAATCATTAAATTGATTCCAGCAATTGGTCTCATTGCCTTTGCTGCTTGGGGGGTTCGGCCTCTCATCCATTTGAGCAGGAATTTATTTCTCCATACAACAGATAGTAATTGGAGCAGAAGTAATGTTTACTATGTTACAACGTCTTACATTCAACCGGTGCTGCTATGGATTGGTGCTACATTACTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCGTGATTCAACATGCACAAAAGTTCTTTGTTGAGACAAATGACTCTAGCGAAACAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACAGCAGTATGGGTTGCTGCTCTATCACTGTTCATGGAGTTGCTCGGTTTCTCTACGCAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTAATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATACCAAACCACAAGTTCACCGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATCTAGCCATCAGCCACTTTGACGTCAATAAGATCAATAATATTGTGGCTGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTACATTGATCCTGAAAATCAAGCTCTCATGATTCTGGTTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCCCGGCTTGCTACACCAATTCGCACAATTCAAAAGACTTTCAGAGAGGGTGACTTGGAAGAAGTAACTTTTGCCGATACCATATTCTCTCGTTCCACAGCAGCTAATGATCGGCCACTGCTACTCATTGAACCCTTGTATAAGATCAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACGCGATCAGACGACGAAAAGGACACCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAGGCTGGATTAGTATCAAATCTTGATGGCAAAACAGATGATAAGACGAGAGGAAAAGAGGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTAAAGCAGGAGTGACATTGGAAAAGCCCTCGGCTGTTTTGTCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTGCAAAGCAAGATGGCGAAGCATTTTCAGAATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCCATTGAGGAAGAAATGCCTTCACCTACAACACTTGAATCAAAAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGCAACCAATCTAAAGATGGTCAGATACCAACTGTTCCGAATGCGACGCAAAATGATTAA 3888 42.8 MSYYYSARVSFGYTAGFAGMASSTAPGIITSLPTPQTDADEIFASAFICKTNFRRQVLRYSPTTVLNLLQEVAQVPEGKIDWNALVKNTVTGISNAREYQMLWRYMAYRHSLSEKLEEEAEPLEDDSDLEYELEPLPAVSNESLTEVAACVKVLIASGFPKDSSVPNSSTVEAPLTINLSYNQSARLENSESACSTQGTYITIPVSVQRQPAPVPSSVEGLDANVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKSVRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTVNSESAVRATAVAAGARIASPSDAASLLKAAQGKNAIHIMPTGAGSIKSSISGGGSIQSDTRPNVHYISTLKSANSLATYPPITPHALRVNSTKTLSSTVQHKLSSAATSSNLLDPKKNVSSNIGAESSIKQEIKIPKLGEKLRQETQADESCAAENAVSEKFQAEKTSSPSPEAELDSQTTGVGKSCSSSLNIKIADSDQNDRKEWTGDNEKVSLFKNQLSEENCKSRSVGKKCESGIGAICDEVERKEHTDDNTMTDASIDLAGENQSFAKKYDVTPITSGGCVQMSESSSMEEDGKQKVEGEYKALIQFDSSFVTYLFMLSLIFFDVENFLFDPQKQNPSTLQILRRVPSPASVSSKYNIFLCQSVLVPGGGGSGPSILKSATLVLSRSYDALCGSLLIIKLIPAIGLIAFAAWGVRPLIHLSRNLFLHTTDSNWSRSNVYYVTTSYIQPVLLWIGATLLCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFAYCLSSVIQHAQKFFVETNDSSETRNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTIQKTFREGDLEEVTFADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDTKQEAASTSNMNASDKAGLVSNLDGKTDDKTRGKEDENMEYKSNNTTPKAGVTLEKPSAVLSESDSEQIDKSSVGFRAKQDGEAFSESPGISMPPLEENILLGVALEGSKRTLPIEEEMPSPTTLESKEMSAHRTPLSQISNQSKDGQIPTVPNATQND 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 810584 828404 - BLOR15920 Blo17g00099 72487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1120 1189 - -
Blo17g00099 1295 Gene3D - 232 290 - -
Blo17g00099 1295 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 672 1286 - -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 473 518 - -
Blo17g00099 1295 SUPERFAMILY Sm-like ribonucleoproteins 904 974 IPR010920 -
Blo17g00099 1295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 289 IPR017930 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1260 1295 - -
Blo17g00099 1295 ProSiteProfiles Myb-like domain profile. 232 281 IPR001005 -
Blo17g00099 1295 Pfam Mechanosensitive ion channel 861 1068 IPR006685 GO:0016020|GO:0055085
Blo17g00099 1295 Pfam Myb-like DNA-binding domain 237 281 IPR001005 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1120 1140 - -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1246 1295 - -
Blo17g00099 1295 Gene3D - 816 918 - -
Blo17g00099 1295 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 672 1286 IPR045042 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 492 518 - -
Blo17g00099 1295 SUPERFAMILY Homeodomain-like 234 286 IPR009057 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 213 237 - -
Blo17g00099 1295 CDD SANT_TRF 238 286 - -
Blo17g00099 1295 Gene3D - 920 975 IPR023408 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1158 1178 - -
Blo17g00099 1295 SMART sant 236 287 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00099 Blo-Chr17:810584 Blo02g00713 Blo-Chr2:22499692 1.38E-08 dispersed
Blo18g00108 Blo-Chr18:1005456 Blo17g00099 Blo-Chr17:810584 8.57E-58 transposed
Blo17g00099 Blo-Chr17:810584 Blo18g00106 Blo-Chr18:991140 0 wgd
Blo17g00099 Blo-Chr17:810584 Blo05g00739 Blo-Chr5:26349643 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13490 PF00924 MS_channel 4.80E-28 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00099 K22047 - csv:101213477 811.986