Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00099 ATGTCGTACTACTACTCCGCCCGCGTTTCCTTCGGATACACCGCAGGCTTCGCCGGAATGGCCTCTTCTACAGCTCCTGGCATAATTACTTCATTACCTACACCACAAACGGATGCGGACGAAATCTTCGCATCCGCATTCATCTGCAAGACCAACTTTCGTAGGCAAGTCCTAAGGTATTCCCCGACGACAGTGCTAAATCTACTTCAGGAGGTAGCGCAGGTTCCGGAAGGAAAGATTGATTGGAATGCGTTAGTTAAGAACACCGTTACCGGGATTTCTAATGCTAGGGAATATCAGATGCTATGGCGGTATATGGCTTATCGTCATTCCTTGTCTGAGAAGTTGGAAGAGGAAGCGGAACCTCTGGAAGATGATAGTGACCTGGAGTATGAATTGGAACCTTTACCAGCTGTGAGTAATGAATCTTTGACAGAGGTTGCCGCCTGTGTGAAGGTATTGATTGCTTCTGGCTTTCCAAAAGACTCAAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTATAATCAATCAGCTAGATTAGAAAATTCAGAATCTGCTTGTTCAACGCAAGGGACATACATTACCATTCCAGTTTCTGTTCAGAGACAGCCTGCCCCTGTACCTTCTTCTGTGGAAGGATTAGATGCAAATGTTACAAGTAACGGCATTATGCCTTCTCGAAGAAAAAGAAAACCCTGGTCTGAGGCGGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGAGTGTTAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTCTCTGAGGACCAAGTCGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAACAATGTTAAAGCAATTTGCACAGTGAACTCAGAATCTGCTGTAAGAGCTACAGCTGTTGCTGCTGGAGCTCGCATTGCTTCCCCATCTGATGCGGCATCTCTACTTAAGGCTGCTCAAGGAAAGAACGCCATTCACATAATGCCAACTGGCGCTGGTTCAATCAAATCGTCTATTTCTGGTGGTGGGTCTATCCAATCAGATACTCGTCCTAATGTACACTATATTTCTACTCTCAAGTCGGCTAATTCTCTCGCAACTTATCCTCCTATCACTCCTCATGCATTGCGTGTCAACTCAACGAAGACCTTATCATCGACAGTTCAGCATAAACTATCGAGTGCTGCCACTTCGTCGAATCTATTAGATCCCAAAAAGAATGTAAGCTCTAACATAGGTGCTGAATCTTCAATAAAGCAAGAGATAAAAATTCCTAAATTAGGGGAAAAGCTGAGACAGGAGACCCAAGCAGATGAATCCTGTGCTGCAGAAAATGCAGTCTCTGAGAAATTTCAAGCGGAAAAAACATCCTCACCAAGCCCAGAAGCTGAATTAGATAGTCAAACCACCGGAGTTGGTAAATCTTGCTCTTCATCATTAAACATTAAGATTGCGGACAGTGATCAGAATGATAGGAAAGAATGGACAGGTGATAATGAGAAAGTGAGTTTGTTCAAGAATCAATTGTCGGAAGAGAACTGCAAGAGTCGATCCGTTGGCAAGAAATGTGAGAGTGGGATCGGCGCAATTTGCGACGAAGTTGAAAGGAAAGAGCACACAGACGATAATACAATGACGGATGCATCGATTGATTTAGCAGGTGAGAATCAATCATTCGCCAAGAAATACGACGTTACTCCGATTACTTCTGGTGGGTGTGTTCAAATGTCAGAATCTTCAAGCATGGAAGAAGATGGCAAACAAAAAGTTGAAGGAGAATACAAGGCCCTAATACAATTTGATAGCTCATTTGTTACTTATTTGTTCATGTTAAGCCTTATCTTCTTTGATGTGGAGAACTTTCTGTTTGATCCTCAGAAGCAGAATCCGTCGACACTTCAAATTTTGAGAAGAGTACCTAGCCCAGCTTCTGTCTCTTCCAAATACAATATTTTCTTGTGCCAATCTGTACTGGTACCAGGAGGAGGAGGAAGTGGGCCTTCTATTTTAAAATCTGCTACTCTGGTTTTGTCTAGATCATATGATGCTTTATGTGGGAGCCTTCTAATCATTAAATTGATTCCAGCAATTGGTCTCATTGCCTTTGCTGCTTGGGGGGTTCGGCCTCTCATCCATTTGAGCAGGAATTTATTTCTCCATACAACAGATAGTAATTGGAGCAGAAGTAATGTTTACTATGTTACAACGTCTTACATTCAACCGGTGCTGCTATGGATTGGTGCTACATTACTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCGTGATTCAACATGCACAAAAGTTCTTTGTTGAGACAAATGACTCTAGCGAAACAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACAGCAGTATGGGTTGCTGCTCTATCACTGTTCATGGAGTTGCTCGGTTTCTCTACGCAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTAATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATACCAAACCACAAGTTCACCGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATCTAGCCATCAGCCACTTTGACGTCAATAAGATCAATAATATTGTGGCTGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTACATTGATCCTGAAAATCAAGCTCTCATGATTCTGGTTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCCCGGCTTGCTACACCAATTCGCACAATTCAAAAGACTTTCAGAGAGGGTGACTTGGAAGAAGTAACTTTTGCCGATACCATATTCTCTCGTTCCACAGCAGCTAATGATCGGCCACTGCTACTCATTGAACCCTTGTATAAGATCAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACGCGATCAGACGACGAAAAGGACACCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAGGCTGGATTAGTATCAAATCTTGATGGCAAAACAGATGATAAGACGAGAGGAAAAGAGGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTAAAGCAGGAGTGACATTGGAAAAGCCCTCGGCTGTTTTGTCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTGCAAAGCAAGATGGCGAAGCATTTTCAGAATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCCATTGAGGAAGAAATGCCTTCACCTACAACACTTGAATCAAAAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGCAACCAATCTAAAGATGGTCAGATACCAACTGTTCCGAATGCGACGCAAAATGATTAA 3888 42.8 MSYYYSARVSFGYTAGFAGMASSTAPGIITSLPTPQTDADEIFASAFICKTNFRRQVLRYSPTTVLNLLQEVAQVPEGKIDWNALVKNTVTGISNAREYQMLWRYMAYRHSLSEKLEEEAEPLEDDSDLEYELEPLPAVSNESLTEVAACVKVLIASGFPKDSSVPNSSTVEAPLTINLSYNQSARLENSESACSTQGTYITIPVSVQRQPAPVPSSVEGLDANVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKSVRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTVNSESAVRATAVAAGARIASPSDAASLLKAAQGKNAIHIMPTGAGSIKSSISGGGSIQSDTRPNVHYISTLKSANSLATYPPITPHALRVNSTKTLSSTVQHKLSSAATSSNLLDPKKNVSSNIGAESSIKQEIKIPKLGEKLRQETQADESCAAENAVSEKFQAEKTSSPSPEAELDSQTTGVGKSCSSSLNIKIADSDQNDRKEWTGDNEKVSLFKNQLSEENCKSRSVGKKCESGIGAICDEVERKEHTDDNTMTDASIDLAGENQSFAKKYDVTPITSGGCVQMSESSSMEEDGKQKVEGEYKALIQFDSSFVTYLFMLSLIFFDVENFLFDPQKQNPSTLQILRRVPSPASVSSKYNIFLCQSVLVPGGGGSGPSILKSATLVLSRSYDALCGSLLIIKLIPAIGLIAFAAWGVRPLIHLSRNLFLHTTDSNWSRSNVYYVTTSYIQPVLLWIGATLLCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFAYCLSSVIQHAQKFFVETNDSSETRNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTIQKTFREGDLEEVTFADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDTKQEAASTSNMNASDKAGLVSNLDGKTDDKTRGKEDENMEYKSNNTTPKAGVTLEKPSAVLSESDSEQIDKSSVGFRAKQDGEAFSESPGISMPPLEENILLGVALEGSKRTLPIEEEMPSPTTLESKEMSAHRTPLSQISNQSKDGQIPTVPNATQND 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 810584 828404 - BLOR15920 Blo17g00099 72487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1120 1189 - -
Blo17g00099 1295 Gene3D - 232 290 - -
Blo17g00099 1295 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 672 1286 - -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 473 518 - -
Blo17g00099 1295 SUPERFAMILY Sm-like ribonucleoproteins 904 974 IPR010920 -
Blo17g00099 1295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 289 IPR017930 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1260 1295 - -
Blo17g00099 1295 ProSiteProfiles Myb-like domain profile. 232 281 IPR001005 -
Blo17g00099 1295 Pfam Mechanosensitive ion channel 861 1068 IPR006685 GO:0016020|GO:0055085
Blo17g00099 1295 Pfam Myb-like DNA-binding domain 237 281 IPR001005 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1120 1140 - -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1246 1295 - -
Blo17g00099 1295 Gene3D - 816 918 - -
Blo17g00099 1295 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 672 1286 IPR045042 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 492 518 - -
Blo17g00099 1295 SUPERFAMILY Homeodomain-like 234 286 IPR009057 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 213 237 - -
Blo17g00099 1295 CDD SANT_TRF 238 286 - -
Blo17g00099 1295 Gene3D - 920 975 IPR023408 -
Blo17g00099 1295 MobiDBLite consensus disorder prediction 1158 1178 - -
Blo17g00099 1295 SMART sant 236 287 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00099 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 811.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00099 Blo-Chr17:810584 Blo02g00713 Blo-Chr2:22499692 1.38E-08 dispersed
Blo18g00108 Blo-Chr18:1005456 Blo17g00099 Blo-Chr17:810584 8.57E-58 transposed
Blo17g00099 Blo-Chr17:810584 Blo18g00106 Blo-Chr18:991140 0 wgd
Blo17g00099 Blo-Chr17:810584 Blo05g00739 Blo-Chr5:26349643 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00585 BCT 1 571 Mechanosensitive Ion Channel Family AT4G00290 52.4 4.1e-147 518.5
Blo17g00099 . 686 1270 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-181 632.5
Blo18g00106 . 9 646 Mechanosensitive Ion Channel Family AT5G10490 53.6 2.2e-180 629.4
Blo05g00739 . 210 695 Mechanosensitive Ion Channel Family AT5G10490 62.2 4.1e-150 528.9
Blo18g00106 . 9 653 Mechanosensitive Ion Channel Family AT1G58200 55.1 1.3e-185 646.7
Blo17g00099 . 669 1266 Mechanosensitive Ion Channel Family AT1G58200 58.8 1.1e-184 643.7
Blo05g00739 . 210 666 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.4e-134 476.5
Blo15g00394 . 611 1471 Mechanosensitive Ion Channel Family AT1G53470 52.7 1.1e-240 830.1
Blo15g00394 . 611 1473 Mechanosensitive Ion Channel Family AT3G14810 52.2 2.4e-232 802.4
Blo15g00394 . 611 1472 Mechanosensitive Ion Channel Family AT1G78610 58.1 5.0e-270 927.5
Blo15g00394 . 769 1468 Mechanosensitive Ion Channel Family AT2G17000 58.2 4.7e-220 761.5
Blo04g00586 . 217 602 Mechanosensitive Ion Channel Family AT2G17000 55.0 1.8e-110 397.5
Blo12g01027 BCT 16 781 Mechanosensitive Ion Channel Family AT5G19520 50.8 2.1e-195 679.5
Blo12g01027 BCT 71 781 Mechanosensitive Ion Channel Family AT5G12080 56.9 2.6e-214 742.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021307 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13490 PF00924 MS_channel 4.80E-28 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00099 Blo_Chr17 FPKM 3.973059 4.650616 23.008253 22.917992 7.720733 8.429723 8.088062 2.797149 2.176835 2.146995