Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00100 ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGACCATGTACGTGGTCTTATAACGATTGGAGAGGAAGAAGACGAATACGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCAAATGAATTCGGTTAGCGTCGTTAACCATGGTGGATTACAGGTTGCGTCAAGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTTCCCGCCGTAACGCCTGAAAAGGTGCAAGCAGTGCTTTTGCTTTTGGGGGGTCGTGATGTGCCAAGTGGCATGCCCACGGTTGAAGTACCTTATGATCAAAGTAACAGGGGAGTTATTGACCCTCCAAAACGCTCAAACCTGTCACGAAGAATAGCTTCCCTTGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGATATACTGTACGAAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGTCAGTTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCTGAGAATGGCCCACAAGATGGTATTCGTTCAGAAACTGTTCTACGAAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACTCCTGCAATGCGCCGTGGTCCGGCTGGACCAAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGACCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCAAGAACTTCGGATGTGCAGGAATCGTCAATAGATATCAAGCCTTCTATAACAGAACCAGAAGTTTCTGATTACCAGGATGATCGTGTACTACTCTTCTTTTATGGACCAGAGGATCCTGGTAAGGCCGTAACAGAAAGTTCTAGTAATCCTTCTGTCCACCAACATCATGAAAATTTGCACGAAGATATTATGGACTCTCTGCCCAAGCAAATTGACCATTCTTCAGGGAATGATGATGAGCAGGAACAGGAACAGGAACCATTGGGTGAACTTGGTAATACTATGAATACAGAGTTAGATATCCCTGCTAACTTTGTTTAG 1071 45.19 MAAANPQPLQSRPFDDHVRGLITIGEEEDEYEDGSGDALDDVQDAQMNSVSVVNHGGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPSGMPTVEVPYDQSNRGVIDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGPQDGIRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPRTSDVQESSIDIKPSITEPEVSDYQDDRVLLFFYGPEDPGKAVTESSSNPSVHQHHENLHEDIMDSLPKQIDHSSGNDDEQEQEQEPLGELGNTMNTELDIPANFV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 844071 847511 + BLOR15921 Blo17g00100 72488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00100 356 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Blo17g00100 356 MobiDBLite consensus disorder prediction 313 356 - -
Blo17g00100 356 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Blo17g00100 356 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Blo17g00100 356 Pfam CCT motif 128 169 IPR010402 GO:0005515
Blo17g00100 356 PANTHER GATA TRANSCRIPTION FACTOR 28 1 355 IPR045280 GO:0006355
Blo17g00100 356 Pfam tify domain 63 94 IPR010399 -
Blo17g00100 356 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Blo17g00100 356 MobiDBLite consensus disorder prediction 167 188 - -
Blo17g00100 356 MobiDBLite consensus disorder prediction 163 189 - -
Blo17g00100 356 MobiDBLite consensus disorder prediction 313 330 - -
Blo17g00100 356 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Blo17g00100 356 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 355 - -
Blo17g00100 356 ProSiteProfiles GATA-type zinc finger domain profile. 193 251 IPR000679 GO:0006355|GO:0043565
Blo17g00100 356 MobiDBLite consensus disorder prediction 240 259 - -
Blo17g00100 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 247 - -
Blo17g00100 356 SMART tify_2 60 95 IPR010399 -
Blo17g00100 356 MobiDBLite consensus disorder prediction 337 356 - -
Blo17g00100 356 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Blo17g00100 356 Gene3D - 195 258 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00100 - - - mcha:111004894 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00030 Blo-Chr3:1409011 Blo17g00100 Blo-Chr17:844071 7.08E-16 dispersed
Blo12g00738 Blo-Chr12:25745729 Blo17g00100 Blo-Chr17:844071 6.83E-69 dispersed
Blo17g00100 Blo-Chr17:844071 Blo15g00319 Blo-Chr15:3679218 3.84E-11 dispersed
Blo17g00100 Blo-Chr17:844071 Blo11g00004 Blo-Chr11:40146 2.75E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00738 . 65 258 Tify Gene Family AT4G24470 63.5 8.3e-61 231.1
Blo11g00004 . 1 240 Tify Gene Family AT4G24470 52.2 1.3e-53 207.2
Blo17g00100 . 25 241 Tify Gene Family AT1G51600 52.2 9.7e-51 197.6
Blo12g00738 . 46 265 Tify Gene Family AT1G51600 51.8 8.2e-50 194.5
Blo12g00738 . 65 258 Tify Gene Family AT4G24470 63.5 8.3e-61 231.1
Blo11g00004 . 1 240 Tify Gene Family AT4G24470 52.2 1.3e-53 207.2
Blo17g00100 . 25 241 Tify Gene Family AT1G51600 52.2 9.7e-51 197.6
Blo12g00738 . 46 265 Tify Gene Family AT1G51600 51.8 8.2e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13491 PF06203 CCT 1.40E-13 CL0281 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00100 Blo_Chr17 FPKM 13.319722 11.958906 12.902921 11.058167 11.133182 12.76 11.984249 2.294043 1.877499 2.749753