Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00104 ATGTCCGTGGAAGACGATCGATCTGCGTCTTCCGATCTGGGAGAAGACGCTGAGATTGTGGCCGGAAATTTGTCCGGATGCTCCGTCGTTGATGATGCCGGGAAGGAGATCCAGGCTCCGTTTCTGGACCAAGTTCTTGAGAACGTCCTCGAAAACGTGCTTCACTTTTTGACCTCTCACCGTGACCGGAACGCCGCATCATTGGTCTGTAAATCATGGTATCGTGTGGAAGCCCTCACTCGATCAGACCTTTTCCTGGGAAACTGTTACGCGATCTCGCCCCCCCGCGCCATCGCCCGGTTCAACCGGGTGAGGTCTGTTACAATCAAAGGCAAGCCCCGGTTTGCTGATTTCAATTTGATGCCACCCAATTGGGGTGCCTACTTTAAACCATGGGTTGTAGCCATGGCTAAAGCCTATCCTTGGTTGGAGAAGGTTTGCCTGAAGCGCATGTTCGTCACTGACGCTGATCTGGCTTTACTTGCCGAGTCCTTCAATGGCTTCAAAGAGCTCGTTCTTGTTTGTTGTGAAGGATTTGGTACTAGTGGGCTCGCAGTGGTTGCGACCAGGTGCAGACAACTGAAAGTACTTGACCTGATCGAGTCGGAGGTTGTAGACGATGATGTTGACTGGATATCTTGTTTTTCAGAGAATGAAAGCTGTCTAGAAGCCCTTATATTCGACTGTGTTGAATGTCCCATTAATTTTGAGGCATTGGAGAAATTGGTGACTAGGTCTCCTTCACTAAAGAAACTTAAGGTGAATAGCTATGTTTCAATTGGGCAGCTATATTGCCTGCTGATTCGAGCTCCACAGCTTACCCACCTTGGTACGGGATCATTCAGTTCTGCAGATGACATTCTTAATGGTGATCCAGAGCCTGACTATGCCTCTGCTTTTGCTGCTTGCAAATCTTTAGTTTGTCTCTCTGGGTTCAAAGAAGTTTCCCCAGAATACTTACCCTCCATCCATCCAGTTTGTGCTCATATCACCTCTCTGAATTTCAGCTATGCATATATCACCGCCCACCAACTGAAACCAGTTATAGCTCACTGCCACAATCTCCAGATATTCTGGGCCCTTGATTCAATCTGTGATGAAGGACTCCAAGCAGTGGCAGCTGCTTGCATGGATCTGAGGGAGCTTCGAGTTTTCCCTGTCGATCCTCGGGAGGACAGTGAATGGCGTGTTTCGGAAATTGGCTTACAGGCAATTTCTGAGGGCTGCAAGAAACTTCAATCCATCTTATATTTCTGCCAGCGCATGACCAATGCAGCTGTAATAGCTATGTCGAGAAATTGCCCAGATCTTGTTGTGTTTCGGCTTTGCATCATGGGGAGACACAGGCCAGACCATATAACCGGAGAACCTATGGATGAAGGTTTTGGAGCCATTGTTATGAACTGTAAGAAGCTCACAAGACTAGCCGTGTCAGGTCTACTAACTGATAGAGCGTTCAGTTACATTGGAAATTATGGAAAATTAATCAGGACCCTATCCGTTGCTTTTGCCGGAGACAGCGATATGGGTTTGAGATACGTCCTTGAGGGCTGTACTAAACTGCAAAAGCTTGAAATTAGGGACAGTCCATTTGGGGATGCAGCCTTGCTTTCTGGATTGCATCATTATTACAACATGAGATTCCTCTGGATGTCGTCCTGTAAATTGTCACATTGTGGCTGTGAGCGGGTGGCTGGAGCAATGCTACAACTAGTCGTGGAAGTCATCAGTGACGAAGAAATAAAAGCAGAGGAGGATTATGTCCATATATTATACATGTATCGATCTCTGGATGGGCCGAGACGTGATGCTCCTAAATTTGTCAGTATTTTG 1833 47.08 MSVEDDRSASSDLGEDAEIVAGNLSGCSVVDDAGKEIQAPFLDQVLENVLENVLHFLTSHRDRNAASLVCKSWYRVEALTRSDLFLGNCYAISPPRAIARFNRVRSVTIKGKPRFADFNLMPPNWGAYFKPWVVAMAKAYPWLEKVCLKRMFVTDADLALLAESFNGFKELVLVCCEGFGTSGLAVVATRCRQLKVLDLIESEVVDDDVDWISCFSENESCLEALIFDCVECPINFEALEKLVTRSPSLKKLKVNSYVSIGQLYCLLIRAPQLTHLGTGSFSSADDILNGDPEPDYASAFAACKSLVCLSGFKEVSPEYLPSIHPVCAHITSLNFSYAYITAHQLKPVIAHCHNLQIFWALDSICDEGLQAVAAACMDLRELRVFPVDPREDSEWRVSEIGLQAISEGCKKLQSILYFCQRMTNAAVIAMSRNCPDLVVFRLCIMGRHRPDHITGEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFSYIGNYGKLIRTLSVAFAGDSDMGLRYVLEGCTKLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSSCKLSHCGCERVAGAMLQLVVEVISDEEIKAEEDYVHILYMYRSLDGPRRDAPKFVSIL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 925838 928116 + BLOR15925 Blo17g00104 72492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00104 611 SUPERFAMILY RNI-like 59 572 - -
Blo17g00104 611 Gene3D - 35 81 - -
Blo17g00104 611 Pfam Transport inhibitor response 1 protein domain 103 148 IPR041101 -
Blo17g00104 611 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 610 - -
Blo17g00104 611 SMART LRR_CC_2 518 542 IPR006553 -
Blo17g00104 611 SMART LRR_CC_2 469 492 IPR006553 -
Blo17g00104 611 SMART LRR_CC_2 409 433 IPR006553 -
Blo17g00104 611 Pfam F-box 43 82 IPR041567 -
Blo17g00104 611 PANTHER F-BOX PROTEIN FBX14 31 610 - -
Blo17g00104 611 Gene3D Ribonuclease Inhibitor 83 611 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00104 - - - cpap:110816477 974.541
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00720 Blo17g00104 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00015 Blo-Chr11:137462 Blo17g00104 Blo-Chr17:925838 0 dispersed
Blo05g00327 Blo-Chr5:3718951 Blo17g00104 Blo-Chr17:925838 0 transposed
Blo10g00397 Blo-Chr10:6764665 Blo17g00104 Blo-Chr17:925838 0 transposed
Blo14g00360 Blo-Chr14:3929541 Blo17g00104 Blo-Chr17:925838 0 transposed
Blo17g00563 Blo-Chr17:10162668 Blo17g00104 Blo-Chr17:925838 0 transposed
Blo12g00720 Blo-Chr12:25516041 Blo17g00104 Blo-Chr17:925838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g477 . Blo12g00720 . Bda03g00467 Bpe02g00131 Bpe04g00428 Bma04g00441 Bma01g02595 . . Cma01g01635 Cma09g00584 . . . Cpe06g00446 . . . . . . . . . . . . . . . Cone4ag1311 Cone7ag1254 . . Lsi04g02267 Csa03g04477 Chy04g00224 . Blo17g00104 . Bda11g00786 Bda13g01371 . Bpe14g00475 . Bma02g00121 Sed05g1571 Cmo01g01680 Cmo09g00571 . . . Car09g00514 . . Bhi09g02480 Tan01g3834 Cmetu04g2278 . Hepe01g2158 Mch11g0695 . Cla11g01410 Cam11g1467 Cec11g1495 Cco11g1491 Clacu11g1628 Cmu11g1445 Cre11g1864 . . . Cme04g00250
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001591 5 2 2 4 3 0 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 2 2 2 2 2 5 2 1 69